Gene annotation
Transcriptome id Sobic.003G296600.3,Sobic.003G296600.1,Sobic.003G296600.2
Synonym Sb03g034700
Functional annotation coiled-coil domain-containing protein 25, putative, expressed
UniProt A0A1B6Q626 , A0A1B6Q625 , A0A1W0VZJ7
Pfam PF05670
Panther DB PTHR13049 PTHR13049:SF3
NCBI CDD KOG3272; Predicted coiled-coil protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11500 : -
RAP-DB (Rice) LOC_Os01g54670.2,LOC_Os01g54670.1 : coiled-coil domain-containing protein 25, putative, expressed
MaizeGDB (Corn) Zm00025a027597
Brachypodium KQK09744 , PNT72864
Barley HORVU3Hr1G071800.1 , HORVU3Hr1G071800.3 , HORVU3Hr1G071800.2 , HORVU3Hr1G071800.5 , HORVU3Hr1G071800.4 , HORVU3Hr1G071800.7 , HORVU3Hr1G071800.6 , HORVU3Hr1G071800.9 , HORVU3Hr1G071800.8 , HORVU3Hr1G071800.11 , HORVU3Hr1G071800.10 , HORVU3Hr1G071800.12
Wheat TraesCS3A02G290100 , TraesCS3D02G289900 , TraesCS3D02G289900 , TraesCS3A02G290100 , TraesCS3B02G324700 , TraesCS3B02G324700 , TraesCS3B02G324700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
2 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
3 Sobic.001G247400 plant-specific domain TIGR01615 family protein, expressed -
4 Sobic.004G221900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
5 Sobic.001G225100 expressed protein -
6 Sobic.006G194150 - -
7 Sobic.002G246600 helix-loop-helix DNA-binding domain containing protein, expressed -
8 Sobic.001G230700 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
9 Sobic.006G184300 OsFBX148 - F-box domain containing protein, expressed -
10 Sobic.003G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.007G023700 MA3 domain containing protein, expressed -
12 Sobic.005G012000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
13 Sobic.007G156500 alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
14 Sobic.002G108800 auxin efflux carrier component, putative, expressed -
15 Sobic.009G183500 expressed protein -
16 Sobic.005G085600 OsFBK25 - F-box domain and kelch repeat containing protein, expressed -
17 Sobic.006G241300 expressed protein -
18 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
19 Sobic.001G082300 cytochrome P450, putative, expressed -
20 Sobic.002G039500 expressed protein -


Gene co-expression network
sample Sobic003G296600 Sobic003G296600 Sobic001G032100 Sobic001G032100 Sobic003G296600--Sobic001G032100 Sobic003G293900 Sobic003G293900 Sobic003G296600--Sobic003G293900 Sobic001G247400 Sobic001G247400 Sobic003G296600--Sobic001G247400 Sobic004G221900 Sobic004G221900 Sobic003G296600--Sobic004G221900 Sobic001G225100 Sobic001G225100 Sobic003G296600--Sobic001G225100 Sobic006G194150 Sobic006G194150 Sobic003G296600--Sobic006G194150 Sobic002G246600 Sobic002G246600 Sobic003G296600--Sobic002G246600 Sobic001G230700 Sobic001G230700 Sobic003G296600--Sobic001G230700 Sobic006G184300 Sobic006G184300 Sobic003G296600--Sobic006G184300 Sobic001G032100--Sobic003G296600 Sobic005G085600 Sobic005G085600 Sobic001G032100--Sobic005G085600 Sobic001G032100--Sobic001G247400 Sobic001G032100--Sobic006G194150 Sobic001G032100--Sobic004G221900 Sobic003G034500 Sobic003G034500 Sobic001G032100--Sobic003G034500 Sobic001G032100--Sobic003G293900 Sobic001G032100--Sobic001G225100 Sobic009G183500 Sobic009G183500 Sobic001G032100--Sobic009G183500 Sobic003G293900--Sobic003G296600 Sobic009G030100 Sobic009G030100 Sobic003G293900--Sobic009G030100 Sobic003G293900--Sobic001G032100 Sobic003G293900--Sobic006G194150 Sobic002G421600 Sobic002G421600 Sobic003G293900--Sobic002G421600 Sobic003G293900--Sobic001G247400 Sobic002G330700 Sobic002G330700 Sobic003G293900--Sobic002G330700 Sobic001G311000 Sobic001G311000 Sobic003G293900--Sobic001G311000 Sobic007G126100 Sobic007G126100 Sobic003G293900--Sobic007G126100 Sobic001G247400--Sobic003G296600 Sobic001G247400--Sobic001G032100 Sobic001G247400--Sobic001G225100 Sobic001G247400--Sobic003G034500 Sobic009G022000 Sobic009G022000 Sobic001G247400--Sobic009G022000 Sobic001G247400--Sobic003G293900 Sobic004G164500 Sobic004G164500 Sobic001G247400--Sobic004G164500 Sobic001G247400--Sobic001G311000 Sobic001G247400--Sobic002G246600 Sobic007G023700 Sobic007G023700 Sobic004G221900--Sobic007G023700 Sobic001G363100 Sobic001G363100 Sobic004G221900--Sobic001G363100 Sobic009G180200 Sobic009G180200 Sobic004G221900--Sobic009G180200 Sobic007G156500 Sobic007G156500 Sobic004G221900--Sobic007G156500 Sobic004G221900--Sobic003G296600 Sobic002G108800 Sobic002G108800 Sobic004G221900--Sobic002G108800 Sobic004G221900--Sobic006G184300 Sobic004G221900--Sobic001G032100 Sobic002G039500 Sobic002G039500 Sobic004G221900--Sobic002G039500 Sobic007G150200 Sobic007G150200 Sobic001G225100--Sobic007G150200 Sobic001G225100--Sobic003G296600 Sobic001G225100--Sobic001G247400 Sobic001G225100--Sobic001G032100 Sobic006G257900 Sobic006G257900 Sobic001G225100--Sobic006G257900 Sobic001G225100--Sobic009G183500 Sobic003G093600 Sobic003G093600 Sobic001G225100--Sobic003G093600 Sobic002G284200 Sobic002G284200 Sobic001G225100--Sobic002G284200 Sobic001G225100--Sobic004G221900 Sobic006G194150--Sobic001G032100 Sobic005G012000 Sobic005G012000 Sobic006G194150--Sobic005G012000 Sobic006G194150--Sobic005G085600 Sobic006G194300 Sobic006G194300 Sobic006G194150--Sobic006G194300 Sobic006G194150--Sobic003G296600 Sobic006G194150--Sobic006G184300 Sobic006G194150--Sobic003G293900 Sobic008G126200 Sobic008G126200 Sobic006G194150--Sobic008G126200 Sobic003G397300 Sobic003G397300 Sobic006G194150--Sobic003G397300 Sobic002G246600--Sobic003G296600 Sobic002G246600--Sobic001G032100 Sobic002G246600--Sobic001G247400 Sobic002G246600--Sobic001G225100 Sobic003G324000 Sobic003G324000 Sobic002G246600--Sobic003G324000 Sobic001G038500 Sobic001G038500 Sobic002G246600--Sobic001G038500 Sobic002G246600--Sobic004G221900 Sobic002G246600--Sobic003G293900 Sobic002G226000 Sobic002G226000 Sobic002G246600--Sobic002G226000 Sobic002G291300 Sobic002G291300 Sobic001G230700--Sobic002G291300 Sobic001G230700--Sobic003G296600 Sobic001G230700--Sobic006G184300 Sobic008G106800 Sobic008G106800 Sobic001G230700--Sobic008G106800 Sobic001G230700--Sobic004G164500 Sobic001G230700--Sobic003G293900 Sobic001G516500 Sobic001G516500 Sobic001G230700--Sobic001G516500 Sobic001G230700--Sobic001G311000 Sobic001G230700--Sobic007G150200 Sobic006G184300--Sobic002G108800 Sobic006G184300--Sobic007G023700 Sobic006G184300--Sobic007G156500 Sobic006G184300--Sobic002G039500 Sobic006G184300--Sobic008G126200 Sobic006G184300--Sobic004G221900 Sobic006G184300--Sobic005G012000 Sobic009G257300 Sobic009G257300 Sobic006G184300--Sobic009G257300 Sobic006G184300--Sobic003G093600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.