Gene annotation
Transcriptome id Sobic.004G221900.1
Synonym Sb04g026640
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
DUF584 domain containing protein, putative, expressed
UniProt C5XXV0
Pfam PF04520
Panther DB PTHR33083 PTHR33083:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G60680 : Protein of unknown function, DUF584
RAP-DB (Rice) LOC_Os02g41840.1 : DUF584 domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G023700 MA3 domain containing protein, expressed -
2 Sobic.001G363100 universal stress protein domain containing protein, putative, expressed -
3 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
4 Sobic.007G156500 alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
5 Sobic.003G296600 coiled-coil domain-containing protein 25, putative, expressed -
6 Sobic.002G108800 auxin efflux carrier component, putative, expressed -
7 Sobic.006G184300 OsFBX148 - F-box domain containing protein, expressed -
8 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
9 Sobic.002G039500 expressed protein -
10 Sobic.005G003200 sugar-responsive gene(PubMedID : 25496467)@asparagine synthetase, putative, expressed K01953: asnB, asparagine synthase (glutamine-hydrolysing)
11 Sobic.005G130100 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
12 Sobic.003G093600 methyltransferase, putative, expressed -
13 Sobic.006G249000 cysteine-rich receptor-like protein kinase 8 precursor, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
14 Sobic.010G248200 KID-containing protein, putative, expressed -
15 Sobic.006G194150 - -
16 Sobic.009G231300 drought induced 19 protein, putative, expressed -
17 Sobic.009G183500 expressed protein -
18 Sobic.007G150200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MTD1, putative, expressed -
19 Sobic.001G225100 expressed protein -
20 Sobic.005G085600 OsFBK25 - F-box domain and kelch repeat containing protein, expressed -


Gene co-expression network
sample Sobic004G221900 Sobic004G221900 Sobic007G023700 Sobic007G023700 Sobic004G221900--Sobic007G023700 Sobic001G363100 Sobic001G363100 Sobic004G221900--Sobic001G363100 Sobic009G180200 Sobic009G180200 Sobic004G221900--Sobic009G180200 Sobic007G156500 Sobic007G156500 Sobic004G221900--Sobic007G156500 Sobic003G296600 Sobic003G296600 Sobic004G221900--Sobic003G296600 Sobic002G108800 Sobic002G108800 Sobic004G221900--Sobic002G108800 Sobic006G184300 Sobic006G184300 Sobic004G221900--Sobic006G184300 Sobic001G032100 Sobic001G032100 Sobic004G221900--Sobic001G032100 Sobic002G039500 Sobic002G039500 Sobic004G221900--Sobic002G039500 Sobic003G093600 Sobic003G093600 Sobic007G023700--Sobic003G093600 Sobic007G023700--Sobic002G039500 Sobic007G023700--Sobic009G180200 Sobic004G143700 Sobic004G143700 Sobic007G023700--Sobic004G143700 Sobic007G023700--Sobic002G108800 Sobic002G221900 Sobic002G221900 Sobic007G023700--Sobic002G221900 Sobic007G023700--Sobic007G156500 Sobic001G347600 Sobic001G347600 Sobic007G023700--Sobic001G347600 Sobic007G023700--Sobic006G184300 Sobic001G363100--Sobic009G180200 Sobic005G003200 Sobic005G003200 Sobic001G363100--Sobic005G003200 Sobic006G249000 Sobic006G249000 Sobic001G363100--Sobic006G249000 Sobic009G078500 Sobic009G078500 Sobic001G363100--Sobic009G078500 Sobic004G199600 Sobic004G199600 Sobic001G363100--Sobic004G199600 Sobic005G130100 Sobic005G130100 Sobic001G363100--Sobic005G130100 Sobic010G146200 Sobic010G146200 Sobic001G363100--Sobic010G146200 Sobic005G085600 Sobic005G085600 Sobic001G363100--Sobic005G085600 Sobic001G363100--Sobic004G221900 Sobic009G180200--Sobic004G199600 Sobic009G180200--Sobic001G363100 Sobic009G109450 Sobic009G109450 Sobic009G180200--Sobic009G109450 Sobic009G180200--Sobic009G078500 Sobic009G180200--Sobic007G023700 Sobic009G231300 Sobic009G231300 Sobic009G180200--Sobic009G231300 Sobic009G180200--Sobic005G130100 Sobic003G258400 Sobic003G258400 Sobic009G180200--Sobic003G258400 Sobic005G121800 Sobic005G121800 Sobic009G180200--Sobic005G121800 Sobic007G156500--Sobic002G108800 Sobic002G253500 Sobic002G253500 Sobic007G156500--Sobic002G253500 Sobic007G156500--Sobic009G231300 Sobic002G007250 Sobic002G007250 Sobic007G156500--Sobic002G007250 Sobic010G248200 Sobic010G248200 Sobic007G156500--Sobic010G248200 Sobic007G156500--Sobic002G039500 Sobic001G345333 Sobic001G345333 Sobic007G156500--Sobic001G345333 Sobic007G156500--Sobic007G023700 Sobic008G161401 Sobic008G161401 Sobic007G156500--Sobic008G161401 Sobic003G296600--Sobic001G032100 Sobic003G293900 Sobic003G293900 Sobic003G296600--Sobic003G293900 Sobic001G247400 Sobic001G247400 Sobic003G296600--Sobic001G247400 Sobic003G296600--Sobic004G221900 Sobic001G225100 Sobic001G225100 Sobic003G296600--Sobic001G225100 Sobic006G194150 Sobic006G194150 Sobic003G296600--Sobic006G194150 Sobic002G246600 Sobic002G246600 Sobic003G296600--Sobic002G246600 Sobic001G230700 Sobic001G230700 Sobic003G296600--Sobic001G230700 Sobic003G296600--Sobic006G184300 Sobic002G108800--Sobic007G156500 Sobic002G108800--Sobic002G007250 Sobic002G108800--Sobic001G345333 Sobic002G108800--Sobic002G253500 Sobic002G108800--Sobic010G248200 Sobic004G212800 Sobic004G212800 Sobic002G108800--Sobic004G212800 Sobic002G108800--Sobic002G039500 Sobic002G108800--Sobic007G023700 Sobic007G073400 Sobic007G073400 Sobic002G108800--Sobic007G073400 Sobic006G184300--Sobic002G108800 Sobic006G184300--Sobic007G023700 Sobic006G184300--Sobic007G156500 Sobic006G184300--Sobic002G039500 Sobic008G126200 Sobic008G126200 Sobic006G184300--Sobic008G126200 Sobic006G184300--Sobic004G221900 Sobic005G012000 Sobic005G012000 Sobic006G184300--Sobic005G012000 Sobic009G257300 Sobic009G257300 Sobic006G184300--Sobic009G257300 Sobic006G184300--Sobic003G093600 Sobic001G032100--Sobic003G296600 Sobic001G032100--Sobic005G085600 Sobic001G032100--Sobic001G247400 Sobic001G032100--Sobic006G194150 Sobic001G032100--Sobic004G221900 Sobic003G034500 Sobic003G034500 Sobic001G032100--Sobic003G034500 Sobic001G032100--Sobic003G293900 Sobic001G032100--Sobic001G225100 Sobic009G183500 Sobic009G183500 Sobic001G032100--Sobic009G183500 Sobic002G039500--Sobic002G253500 Sobic002G039500--Sobic007G023700 Sobic002G039500--Sobic002G108800 Sobic002G039500--Sobic007G156500 Sobic002G039500--Sobic002G221900 Sobic002G039500--Sobic004G212800 Sobic002G039500--Sobic009G231300 Sobic003G044900 Sobic003G044900 Sobic002G039500--Sobic003G044900 Sobic002G039500--Sobic007G073400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.