Gene annotation
Transcriptome id Sobic.009G183500.1
Synonym Sb09g024330
Functional annotation expressed protein
UniProt C5Z0B3
Pfam -
Panther DB PTHR37250 PTHR37250:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04000 : -
RAP-DB (Rice) LOC_Os05g41620.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU1Hr1G067370.2 , HORVU1Hr1G067370.3 , HORVU1Hr1G067370.1
Wheat -
Populus -


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cDNA sequences
Sobic.009G183500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G023700 MA3 domain containing protein, expressed -
2 Sobic.003G093600 methyltransferase, putative, expressed -
3 Sobic.002G221900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
4 Sobic.004G188300 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS2-11 - C2H2 zinc finger protein, expressed -
5 Sobic.002G039500 expressed protein -
6 Sobic.003G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.008G126200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin binding protein, putative, expressed -
8 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
9 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
10 Sobic.006G184300 OsFBX148 - F-box domain containing protein, expressed -
11 Sobic.003G026300 BES1/BZR1 homolog protein, putative, expressed -
12 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
13 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
14 Sobic.001G225100 expressed protein -
15 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
16 Sobic.005G012000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
17 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
18 Sobic.001G179000 DNA-directed RNA polymerase subunit, putative, expressed K03014: RPB6, DNA-directed RNA polymerases I, II, and III subunit RPABC2
19 Sobic.004G221900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
20 Sobic.009G022000 white-brown complex homolog protein 16, putative, expressed -


Gene co-expression network
sample Sobic009G183500 Sobic009G183500 Sobic007G023700 Sobic007G023700 Sobic009G183500--Sobic007G023700 Sobic003G093600 Sobic003G093600 Sobic009G183500--Sobic003G093600 Sobic002G221900 Sobic002G221900 Sobic009G183500--Sobic002G221900 Sobic004G188300 Sobic004G188300 Sobic009G183500--Sobic004G188300 Sobic002G039500 Sobic002G039500 Sobic009G183500--Sobic002G039500 Sobic003G034500 Sobic003G034500 Sobic009G183500--Sobic003G034500 Sobic008G126200 Sobic008G126200 Sobic009G183500--Sobic008G126200 Sobic004G143700 Sobic004G143700 Sobic009G183500--Sobic004G143700 Sobic006G257900 Sobic006G257900 Sobic009G183500--Sobic006G257900 Sobic007G023700--Sobic003G093600 Sobic007G023700--Sobic002G039500 Sobic009G180200 Sobic009G180200 Sobic007G023700--Sobic009G180200 Sobic007G023700--Sobic004G143700 Sobic002G108800 Sobic002G108800 Sobic007G023700--Sobic002G108800 Sobic007G023700--Sobic002G221900 Sobic007G156500 Sobic007G156500 Sobic007G023700--Sobic007G156500 Sobic001G347600 Sobic001G347600 Sobic007G023700--Sobic001G347600 Sobic006G184300 Sobic006G184300 Sobic007G023700--Sobic006G184300 Sobic003G093600--Sobic007G023700 Sobic009G022200 Sobic009G022200 Sobic003G093600--Sobic009G022200 Sobic004G271900 Sobic004G271900 Sobic003G093600--Sobic004G271900 Sobic007G205800 Sobic007G205800 Sobic003G093600--Sobic007G205800 Sobic003G093600--Sobic004G143700 Sobic009G156000 Sobic009G156000 Sobic003G093600--Sobic009G156000 Sobic009G087800 Sobic009G087800 Sobic003G093600--Sobic009G087800 Sobic003G258400 Sobic003G258400 Sobic003G093600--Sobic003G258400 Sobic001G424700 Sobic001G424700 Sobic003G093600--Sobic001G424700 Sobic002G221900--Sobic007G023700 Sobic002G221900--Sobic002G108800 Sobic002G221900--Sobic007G156500 Sobic003G044900 Sobic003G044900 Sobic002G221900--Sobic003G044900 Sobic002G253500 Sobic002G253500 Sobic002G221900--Sobic002G253500 Sobic001G024200 Sobic001G024200 Sobic002G221900--Sobic001G024200 Sobic002G221900--Sobic002G039500 Sobic002G221900--Sobic004G143700 Sobic003G204000 Sobic003G204000 Sobic002G221900--Sobic003G204000 Sobic003G026300 Sobic003G026300 Sobic004G188300--Sobic003G026300 Sobic004G188300--Sobic003G093600 Sobic001G222300 Sobic001G222300 Sobic004G188300--Sobic001G222300 Sobic007G150200 Sobic007G150200 Sobic004G188300--Sobic007G150200 Sobic004G188300--Sobic009G183500 Sobic004G188300--Sobic007G023700 Sobic004G188300--Sobic006G257900 Sobic005G167300 Sobic005G167300 Sobic004G188300--Sobic005G167300 Sobic010G218100 Sobic010G218100 Sobic004G188300--Sobic010G218100 Sobic002G039500--Sobic002G253500 Sobic002G039500--Sobic007G023700 Sobic002G039500--Sobic002G108800 Sobic002G039500--Sobic007G156500 Sobic002G039500--Sobic002G221900 Sobic004G212800 Sobic004G212800 Sobic002G039500--Sobic004G212800 Sobic009G231300 Sobic009G231300 Sobic002G039500--Sobic009G231300 Sobic002G039500--Sobic003G044900 Sobic007G073400 Sobic007G073400 Sobic002G039500--Sobic007G073400 Sobic003G034500--Sobic009G183500 Sobic001G516500 Sobic001G516500 Sobic003G034500--Sobic001G516500 Sobic001G032100 Sobic001G032100 Sobic003G034500--Sobic001G032100 Sobic003G034500--Sobic008G126200 Sobic001G247400 Sobic001G247400 Sobic003G034500--Sobic001G247400 Sobic003G296600 Sobic003G296600 Sobic003G034500--Sobic003G296600 Sobic006G194150 Sobic006G194150 Sobic003G034500--Sobic006G194150 Sobic001G363100 Sobic001G363100 Sobic003G034500--Sobic001G363100 Sobic001G028800 Sobic001G028800 Sobic003G034500--Sobic001G028800 Sobic008G126200--Sobic006G184300 SobicK024000 SobicK024000 Sobic008G126200--SobicK024000 Sobic002G270300 Sobic002G270300 Sobic008G126200--Sobic002G270300 Sobic008G126200--Sobic007G023700 Sobic008G009500 Sobic008G009500 Sobic008G126200--Sobic008G009500 Sobic008G126200--Sobic001G347600 Sobic005G012000 Sobic005G012000 Sobic008G126200--Sobic005G012000 Sobic008G126200--Sobic003G093600 Sobic008G126200--Sobic002G108800 Sobic004G143700--Sobic007G073400 Sobic004G143700--Sobic007G023700 Sobic004G143700--Sobic004G212800 Sobic002G283300 Sobic002G283300 Sobic004G143700--Sobic002G283300 Sobic010G248200 Sobic010G248200 Sobic004G143700--Sobic010G248200 Sobic004G143700--Sobic001G024200 Sobic004G143700--Sobic003G093600 Sobic001G439500 Sobic001G439500 Sobic004G143700--Sobic001G439500 Sobic001G543900 Sobic001G543900 Sobic004G143700--Sobic001G543900 Sobic010G071200 Sobic010G071200 Sobic006G257900--Sobic010G071200 Sobic001G149700 Sobic001G149700 Sobic006G257900--Sobic001G149700 Sobic001G478300 Sobic001G478300 Sobic006G257900--Sobic001G478300 Sobic010G154150 Sobic010G154150 Sobic006G257900--Sobic010G154150 Sobic007G063200 Sobic007G063200 Sobic006G257900--Sobic007G063200 Sobic004G231400 Sobic004G231400 Sobic006G257900--Sobic004G231400 Sobic010G055500 Sobic010G055500 Sobic006G257900--Sobic010G055500 Sobic006G257900--Sobic004G188300 Sobic004G164500 Sobic004G164500 Sobic006G257900--Sobic004G164500
Octagon: transcription factors


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