Gene annotation
Transcriptome id Sobic.002G221900.1
Synonym Sb02g026280, EFE,ACC oxidase 1, ACO4, EAT1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
Decreased expression in phyB-1 mutant (PubMedID : 26893475)
1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed
UniProt C5X274
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF193
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology K05933; aminocyclopropanecarboxylate oxidase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G05010 : ethylene-forming enzyme
RAP-DB (Rice) LOC_Os09g27820.1 : 1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed
MaizeGDB (Corn) Zm00025a033063 , Zm00025a055410 , Zm00025a055408 , Zm00025a055407 , Zm00025a055405 , Zm00025a022260 , Zm00025a038390 , Zm00025a034057 , Zm00025a034056 , Zm00025a047223
Brachypodium KQJ90477 , KQK08434 , PNT72253 , KQK01696
Barley HORVU7Hr1G028710.2 , HORVU7Hr1G028710.1 , HORVU5Hr1G067530.1 , HORVU5Hr1G067530.2 , HORVU5Hr1G067530.3 , HORVU5Hr1G067530.4 , HORVU1Hr1G020410.2 , HORVU1Hr1G020410.3 , HORVU1Hr1G020410.1 , HORVU5Hr1G067490.4 , HORVU5Hr1G067490.3 , HORVU5Hr1G067490.2 , HORVU5Hr1G067490.1 , HORVU1Hr1G020430.1 , HORVU7Hr1G116830.1 , HORVU7Hr1G116830.2 , HORVU7Hr1G116830.3 , HORVU7Hr1G116830.4 , HORVU7Hr1G116830.5 , HORVU7Hr1G116830.6 , HORVU7Hr1G116830.7 , HORVU6Hr1G079600.6 , HORVU6Hr1G079600.4 , HORVU6Hr1G079600.5 , HORVU6Hr1G079600.2 , HORVU6Hr1G079600.3 , HORVU6Hr1G079600.1 , HORVU6Hr1G079640.3 , HORVU6Hr1G079640.1 , HORVU6Hr1G079640.6 , HORVU6Hr1G079640.7 , HORVU6Hr1G079640.4 , HORVU6Hr1G079640.5
Wheat TraesCS6A02G325600 , TraesCS6D02G305400 , TraesCS6A02G325400 , TraesCS6A02G325700 , TraesCS6B02G355700 , TraesCS5D02G241000 , TraesCS6A02G325500 , TraesCS7D02G516200 , TraesCS6B02G355800 , TraesCS5B02G232600 , TraesCS5A02G234300 , TraesCS5A02G234300 , TraesCS6B02G356200 , TraesCS5B02G232700 , TraesCS5D02G241100 , TraesCS5D02G241100 , TraesCS6B02G356000 , TraesCS5A02G234200 , TraesCS6D02G305100 , TraesCS6D02G305100 , TraesCS6D02G305200
Populus -


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cDNA sequences
Sobic.002G221900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G023700 MA3 domain containing protein, expressed -
2 Sobic.002G108800 auxin efflux carrier component, putative, expressed -
3 Sobic.007G156500 alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
4 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
5 Sobic.002G253500 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
6 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
7 Sobic.002G039500 expressed protein -
8 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
9 Sobic.003G204000 expressed protein -
10 Sobic.010G248200 KID-containing protein, putative, expressed -
11 Sobic.003G093600 methyltransferase, putative, expressed -
12 Sobic.009G183500 expressed protein -
13 Sobic.001G345333 - -
14 Sobic.004G212800 - -
15 Sobic.004G188300 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS2-11 - C2H2 zinc finger protein, expressed -
16 Sobic.005G162600 zinc knuckle domain containing protein, expressed -
17 Sobic.003G117000 late embryogenesis abundant protein, putative, expressed -
18 Sobic.008G161401 - -
19 Sobic.003G015000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
20 Sobic.002G007250 - -


Gene co-expression network
sample Sobic002G221900 Sobic002G221900 Sobic007G023700 Sobic007G023700 Sobic002G221900--Sobic007G023700 Sobic002G108800 Sobic002G108800 Sobic002G221900--Sobic002G108800 Sobic007G156500 Sobic007G156500 Sobic002G221900--Sobic007G156500 Sobic003G044900 Sobic003G044900 Sobic002G221900--Sobic003G044900 Sobic002G253500 Sobic002G253500 Sobic002G221900--Sobic002G253500 Sobic001G024200 Sobic001G024200 Sobic002G221900--Sobic001G024200 Sobic002G039500 Sobic002G039500 Sobic002G221900--Sobic002G039500 Sobic004G143700 Sobic004G143700 Sobic002G221900--Sobic004G143700 Sobic003G204000 Sobic003G204000 Sobic002G221900--Sobic003G204000 Sobic003G093600 Sobic003G093600 Sobic007G023700--Sobic003G093600 Sobic007G023700--Sobic002G039500 Sobic009G180200 Sobic009G180200 Sobic007G023700--Sobic009G180200 Sobic007G023700--Sobic004G143700 Sobic007G023700--Sobic002G108800 Sobic007G023700--Sobic002G221900 Sobic007G023700--Sobic007G156500 Sobic001G347600 Sobic001G347600 Sobic007G023700--Sobic001G347600 Sobic006G184300 Sobic006G184300 Sobic007G023700--Sobic006G184300 Sobic002G108800--Sobic007G156500 Sobic002G007250 Sobic002G007250 Sobic002G108800--Sobic002G007250 Sobic001G345333 Sobic001G345333 Sobic002G108800--Sobic001G345333 Sobic002G108800--Sobic002G253500 Sobic010G248200 Sobic010G248200 Sobic002G108800--Sobic010G248200 Sobic004G212800 Sobic004G212800 Sobic002G108800--Sobic004G212800 Sobic002G108800--Sobic002G039500 Sobic002G108800--Sobic007G023700 Sobic007G073400 Sobic007G073400 Sobic002G108800--Sobic007G073400 Sobic007G156500--Sobic002G108800 Sobic007G156500--Sobic002G253500 Sobic009G231300 Sobic009G231300 Sobic007G156500--Sobic009G231300 Sobic007G156500--Sobic002G007250 Sobic007G156500--Sobic010G248200 Sobic007G156500--Sobic002G039500 Sobic007G156500--Sobic001G345333 Sobic007G156500--Sobic007G023700 Sobic008G161401 Sobic008G161401 Sobic007G156500--Sobic008G161401 Sobic003G044900--Sobic002G221900 Sobic003G044900--Sobic004G212800 Sobic003G044900--Sobic004G143700 Sobic003G044900--Sobic001G024200 Sobic003G044900--Sobic007G073400 Sobic002G221700 Sobic002G221700 Sobic003G044900--Sobic002G221700 Sobic003G015000 Sobic003G015000 Sobic003G044900--Sobic003G015000 Sobic003G044900--Sobic002G039500 Sobic009G214600 Sobic009G214600 Sobic003G044900--Sobic009G214600 Sobic002G253500--Sobic010G248200 Sobic002G253500--Sobic002G108800 Sobic002G253500--Sobic007G156500 Sobic002G253500--Sobic002G039500 Sobic002G253500--Sobic001G345333 Sobic002G253500--Sobic002G007250 Sobic002G253500--Sobic004G212800 Sobic010G218500 Sobic010G218500 Sobic002G253500--Sobic010G218500 Sobic002G253500--Sobic008G161401 Sobic001G024200--Sobic004G212800 Sobic007G211000 Sobic007G211000 Sobic001G024200--Sobic007G211000 Sobic004G112500 Sobic004G112500 Sobic001G024200--Sobic004G112500 Sobic001G024200--Sobic003G204000 Sobic001G272000 Sobic001G272000 Sobic001G024200--Sobic001G272000 Sobic004G164600 Sobic004G164600 Sobic001G024200--Sobic004G164600 SobicK009900 SobicK009900 Sobic001G024200--SobicK009900 Sobic001G439500 Sobic001G439500 Sobic001G024200--Sobic001G439500 Sobic001G024200--Sobic010G248200 Sobic002G039500--Sobic002G253500 Sobic002G039500--Sobic007G023700 Sobic002G039500--Sobic002G108800 Sobic002G039500--Sobic007G156500 Sobic002G039500--Sobic002G221900 Sobic002G039500--Sobic004G212800 Sobic002G039500--Sobic009G231300 Sobic002G039500--Sobic003G044900 Sobic002G039500--Sobic007G073400 Sobic004G143700--Sobic007G073400 Sobic004G143700--Sobic007G023700 Sobic004G143700--Sobic004G212800 Sobic002G283300 Sobic002G283300 Sobic004G143700--Sobic002G283300 Sobic004G143700--Sobic010G248200 Sobic004G143700--Sobic001G024200 Sobic004G143700--Sobic003G093600 Sobic004G143700--Sobic001G439500 Sobic001G543900 Sobic001G543900 Sobic004G143700--Sobic001G543900 Sobic003G204000--Sobic001G024200 Sobic008G068800 Sobic008G068800 Sobic003G204000--Sobic008G068800 Sobic003G204000--Sobic004G212800 Sobic008G116500 Sobic008G116500 Sobic003G204000--Sobic008G116500 Sobic004G169501 Sobic004G169501 Sobic003G204000--Sobic004G169501 Sobic003G204000--Sobic001G543900 Sobic003G204000--Sobic004G112500 Sobic002G297800 Sobic002G297800 Sobic003G204000--Sobic002G297800 Sobic003G315332 Sobic003G315332 Sobic003G204000--Sobic003G315332
Octagon: transcription factors


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