Gene annotation
Transcriptome id Sobic.003G015000.1,Sobic.003G015000.2
Synonym SbGH3-5, Gretchen Hagen3, FIN219, Sb03g001490, JAR1
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment" (PubMedID : 20499123)
OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed
UniProt A0A1W0VVC9 , C5XKE2
Pfam PF03321
Panther DB PTHR31901 PTHR31901:SF13
NCBI CDD -
KEGG Orthology K14487; auxin responsive GH3 gene family
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G46370 : Auxin-responsive GH3 family protein
RAP-DB (Rice) LOC_Os01g12160.2,LOC_Os01g12160.1 : OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed
MaizeGDB (Corn) Zm00025a022882 , Zm00025a035943
Brachypodium KQJ88359 , KQK03340
Barley HORVU3Hr1G029670.13 , HORVU3Hr1G029670.11 , HORVU3Hr1G029670.10 , HORVU2Hr1G084510.1 , HORVU3Hr1G029670.7 , HORVU3Hr1G029670.6 , HORVU3Hr1G029670.5 , HORVU3Hr1G029670.4 , HORVU3Hr1G029670.3 , HORVU3Hr1G029670.2 , HORVU3Hr1G029670.1 , HORVU3Hr1G029670.9 , HORVU3Hr1G029670.8
Wheat TraesCS3A02G145300 , TraesCS3B02G172400
Populus -


JBrowse

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cDNA sequences
Sobic.003G015000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G228201 - -
2 Sobic.009G257300 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
3 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
4 Sobic.008G079100 - -
5 Sobic.004G212800 - -
6 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
7 Sobic.003G128600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNAJ heat shock N-terminal domain-containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
8 Sobic.009G059600 KIP1, putative, expressed -
9 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
10 Sobic.004G164600 - -
11 Sobic.002G253500 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
12 Sobic.001G345333 - -
13 Sobic.004G076732 - K14800: pre-rRNA-processing protein TSR2
14 Sobic.002G221900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
15 Sobic.002G039500 expressed protein -
16 Sobic.002G007250 - -
17 Sobic.007G142050 - -
18 Sobic.002G108800 auxin efflux carrier component, putative, expressed -
19 Sobic.K009900 autophagy-related protein 8D, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
20 Sobic.001G272000 - -


Gene co-expression network
sample Sobic003G015000 Sobic003G015000 Sobic009G228201 Sobic009G228201 Sobic003G015000--Sobic009G228201 Sobic009G257300 Sobic009G257300 Sobic003G015000--Sobic009G257300 Sobic003G044900 Sobic003G044900 Sobic003G015000--Sobic003G044900 Sobic008G079100 Sobic008G079100 Sobic003G015000--Sobic008G079100 Sobic004G212800 Sobic004G212800 Sobic003G015000--Sobic004G212800 Sobic001G024200 Sobic001G024200 Sobic003G015000--Sobic001G024200 Sobic003G128600 Sobic003G128600 Sobic003G015000--Sobic003G128600 Sobic009G059600 Sobic009G059600 Sobic003G015000--Sobic009G059600 Sobic007G073400 Sobic007G073400 Sobic003G015000--Sobic007G073400 Sobic009G228201--Sobic003G015000 Sobic010G278500 Sobic010G278500 Sobic009G228201--Sobic010G278500 Sobic009G228201--Sobic009G257300 Sobic009G228201--Sobic008G079100 Sobic009G228201--Sobic004G212800 Sobic008G167300 Sobic008G167300 Sobic009G228201--Sobic008G167300 Sobic010G248200 Sobic010G248200 Sobic009G228201--Sobic010G248200 Sobic001G345333 Sobic001G345333 Sobic009G228201--Sobic001G345333 Sobic006G046000 Sobic006G046000 Sobic009G228201--Sobic006G046000 Sobic009G257300--Sobic003G015000 Sobic002G039600 Sobic002G039600 Sobic009G257300--Sobic002G039600 Sobic009G257300--Sobic007G073400 Sobic009G257300--Sobic009G228201 Sobic002G039500 Sobic002G039500 Sobic009G257300--Sobic002G039500 Sobic009G257300--Sobic008G079100 Sobic007G023700 Sobic007G023700 Sobic009G257300--Sobic007G023700 Sobic004G143700 Sobic004G143700 Sobic009G257300--Sobic004G143700 Sobic009G180200 Sobic009G180200 Sobic009G257300--Sobic009G180200 Sobic002G221900 Sobic002G221900 Sobic003G044900--Sobic002G221900 Sobic003G044900--Sobic004G212800 Sobic003G044900--Sobic004G143700 Sobic003G044900--Sobic001G024200 Sobic003G044900--Sobic007G073400 Sobic002G221700 Sobic002G221700 Sobic003G044900--Sobic002G221700 Sobic003G044900--Sobic003G015000 Sobic003G044900--Sobic002G039500 Sobic009G214600 Sobic009G214600 Sobic003G044900--Sobic009G214600 Sobic008G042250 Sobic008G042250 Sobic008G079100--Sobic008G042250 Sobic009G209800 Sobic009G209800 Sobic008G079100--Sobic009G209800 SobicK024000 SobicK024000 Sobic008G079100--SobicK024000 Sobic003G031750 Sobic003G031750 Sobic008G079100--Sobic003G031750 Sobic001G253100 Sobic001G253100 Sobic008G079100--Sobic001G253100 Sobic005G110430 Sobic005G110430 Sobic008G079100--Sobic005G110430 Sobic008G049701 Sobic008G049701 Sobic008G079100--Sobic008G049701 Sobic002G062300 Sobic002G062300 Sobic008G079100--Sobic002G062300 Sobic008G009500 Sobic008G009500 Sobic008G079100--Sobic008G009500 Sobic004G212800--Sobic007G073400 Sobic004G164600 Sobic004G164600 Sobic004G212800--Sobic004G164600 Sobic004G212800--Sobic001G024200 Sobic004G212800--Sobic001G345333 Sobic002G007250 Sobic002G007250 Sobic004G212800--Sobic002G007250 Sobic004G212800--Sobic010G248200 Sobic004G076732 Sobic004G076732 Sobic004G212800--Sobic004G076732 Sobic008G161401 Sobic008G161401 Sobic004G212800--Sobic008G161401 Sobic004G112500 Sobic004G112500 Sobic004G212800--Sobic004G112500 Sobic001G024200--Sobic004G212800 Sobic007G211000 Sobic007G211000 Sobic001G024200--Sobic007G211000 Sobic001G024200--Sobic004G112500 Sobic003G204000 Sobic003G204000 Sobic001G024200--Sobic003G204000 Sobic001G272000 Sobic001G272000 Sobic001G024200--Sobic001G272000 Sobic001G024200--Sobic004G164600 SobicK009900 SobicK009900 Sobic001G024200--SobicK009900 Sobic001G439500 Sobic001G439500 Sobic001G024200--Sobic001G439500 Sobic001G024200--Sobic010G248200 Sobic003G128600--Sobic009G059600 Sobic004G169501 Sobic004G169501 Sobic003G128600--Sobic004G169501 Sobic003G128600--Sobic003G015000 Sobic002G140800 Sobic002G140800 Sobic003G128600--Sobic002G140800 Sobic004G286900 Sobic004G286900 Sobic003G128600--Sobic004G286900 Sobic003G128600--Sobic009G257300 Sobic003G128600--Sobic004G164600 Sobic008G068800 Sobic008G068800 Sobic003G128600--Sobic008G068800 Sobic008G117200 Sobic008G117200 Sobic003G128600--Sobic008G117200 Sobic009G059600--Sobic004G164600 Sobic007G099500 Sobic007G099500 Sobic009G059600--Sobic007G099500 Sobic009G059600--Sobic004G212800 Sobic009G059600--Sobic007G073400 Sobic009G059600--Sobic008G068800 Sobic009G059600--Sobic003G128600 Sobic003G424100 Sobic003G424100 Sobic009G059600--Sobic003G424100 Sobic007G142050 Sobic007G142050 Sobic009G059600--Sobic007G142050 Sobic009G059600--Sobic004G076732 Sobic007G073400--Sobic004G212800 Sobic007G073400--Sobic004G164600 Sobic007G073400--Sobic004G076732 Sobic007G073400--Sobic008G009500 Sobic009G113600 Sobic009G113600 Sobic007G073400--Sobic009G113600 Sobic008G031350 Sobic008G031350 Sobic007G073400--Sobic008G031350 Sobic007G073400--Sobic008G042250 Sobic007G073400--Sobic005G110430 Sobic007G073400--Sobic004G143700
Octagon: transcription factors


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