Gene annotation
Transcriptome id Sobic.002G039500.1
Synonym Sb02g003395
Functional annotation expressed protein
UniProt C5X9N6
Pfam PF13671
Panther DB PTHR37807 PTHR37807:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g06644.3 : expressed protein
MaizeGDB (Corn) Zm00025a045058
Brachypodium KQK20842
Barley HORVU2Hr1G059780.14 , HORVU2Hr1G059780.11 , HORVU2Hr1G059780.10 , HORVU2Hr1G059780.13 , HORVU2Hr1G059780.12 , HORVU2Hr1G059780.9 , HORVU2Hr1G059780.8 , HORVU2Hr1G059780.5 , HORVU2Hr1G059780.4 , HORVU2Hr1G059780.7 , HORVU2Hr1G059780.6
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.002G039500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G253500 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
2 Sobic.007G023700 MA3 domain containing protein, expressed -
3 Sobic.002G108800 auxin efflux carrier component, putative, expressed -
4 Sobic.007G156500 alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
5 Sobic.002G221900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
6 Sobic.004G212800 - -
7 Sobic.009G231300 drought induced 19 protein, putative, expressed -
8 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
9 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
10 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
11 Sobic.010G248200 KID-containing protein, putative, expressed -
12 Sobic.001G345333 - -
13 Sobic.006G184300 OsFBX148 - F-box domain containing protein, expressed -
14 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
15 Sobic.009G257300 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
16 Sobic.002G007250 - -
17 Sobic.008G161401 - -
18 Sobic.008G009500 pentatricopeptide, putative, expressed -
19 Sobic.001G347600 paramyosin, putative, expressed -
20 Sobic.002G077200 expressed protein -


Gene co-expression network
sample Sobic002G039500 Sobic002G039500 Sobic002G253500 Sobic002G253500 Sobic002G039500--Sobic002G253500 Sobic007G023700 Sobic007G023700 Sobic002G039500--Sobic007G023700 Sobic002G108800 Sobic002G108800 Sobic002G039500--Sobic002G108800 Sobic007G156500 Sobic007G156500 Sobic002G039500--Sobic007G156500 Sobic002G221900 Sobic002G221900 Sobic002G039500--Sobic002G221900 Sobic004G212800 Sobic004G212800 Sobic002G039500--Sobic004G212800 Sobic009G231300 Sobic009G231300 Sobic002G039500--Sobic009G231300 Sobic003G044900 Sobic003G044900 Sobic002G039500--Sobic003G044900 Sobic007G073400 Sobic007G073400 Sobic002G039500--Sobic007G073400 Sobic010G248200 Sobic010G248200 Sobic002G253500--Sobic010G248200 Sobic002G253500--Sobic002G108800 Sobic002G253500--Sobic007G156500 Sobic002G253500--Sobic002G039500 Sobic001G345333 Sobic001G345333 Sobic002G253500--Sobic001G345333 Sobic002G007250 Sobic002G007250 Sobic002G253500--Sobic002G007250 Sobic002G253500--Sobic004G212800 Sobic010G218500 Sobic010G218500 Sobic002G253500--Sobic010G218500 Sobic008G161401 Sobic008G161401 Sobic002G253500--Sobic008G161401 Sobic003G093600 Sobic003G093600 Sobic007G023700--Sobic003G093600 Sobic007G023700--Sobic002G039500 Sobic009G180200 Sobic009G180200 Sobic007G023700--Sobic009G180200 Sobic004G143700 Sobic004G143700 Sobic007G023700--Sobic004G143700 Sobic007G023700--Sobic002G108800 Sobic007G023700--Sobic002G221900 Sobic007G023700--Sobic007G156500 Sobic001G347600 Sobic001G347600 Sobic007G023700--Sobic001G347600 Sobic006G184300 Sobic006G184300 Sobic007G023700--Sobic006G184300 Sobic002G108800--Sobic007G156500 Sobic002G108800--Sobic002G007250 Sobic002G108800--Sobic001G345333 Sobic002G108800--Sobic002G253500 Sobic002G108800--Sobic010G248200 Sobic002G108800--Sobic004G212800 Sobic002G108800--Sobic002G039500 Sobic002G108800--Sobic007G023700 Sobic002G108800--Sobic007G073400 Sobic007G156500--Sobic002G108800 Sobic007G156500--Sobic002G253500 Sobic007G156500--Sobic009G231300 Sobic007G156500--Sobic002G007250 Sobic007G156500--Sobic010G248200 Sobic007G156500--Sobic002G039500 Sobic007G156500--Sobic001G345333 Sobic007G156500--Sobic007G023700 Sobic007G156500--Sobic008G161401 Sobic002G221900--Sobic007G023700 Sobic002G221900--Sobic002G108800 Sobic002G221900--Sobic007G156500 Sobic002G221900--Sobic003G044900 Sobic002G221900--Sobic002G253500 Sobic001G024200 Sobic001G024200 Sobic002G221900--Sobic001G024200 Sobic002G221900--Sobic002G039500 Sobic002G221900--Sobic004G143700 Sobic003G204000 Sobic003G204000 Sobic002G221900--Sobic003G204000 Sobic004G212800--Sobic007G073400 Sobic004G164600 Sobic004G164600 Sobic004G212800--Sobic004G164600 Sobic004G212800--Sobic001G024200 Sobic004G212800--Sobic001G345333 Sobic004G212800--Sobic002G007250 Sobic004G212800--Sobic010G248200 Sobic004G076732 Sobic004G076732 Sobic004G212800--Sobic004G076732 Sobic004G212800--Sobic008G161401 Sobic004G112500 Sobic004G112500 Sobic004G212800--Sobic004G112500 Sobic005G130100 Sobic005G130100 Sobic009G231300--Sobic005G130100 Sobic009G231300--Sobic009G180200 Sobic009G109450 Sobic009G109450 Sobic009G231300--Sobic009G109450 Sobic009G078500 Sobic009G078500 Sobic009G231300--Sobic009G078500 Sobic009G231300--Sobic007G156500 Sobic005G003200 Sobic005G003200 Sobic009G231300--Sobic005G003200 Sobic003G258400 Sobic003G258400 Sobic009G231300--Sobic003G258400 Sobic004G199600 Sobic004G199600 Sobic009G231300--Sobic004G199600 Sobic010G050600 Sobic010G050600 Sobic009G231300--Sobic010G050600 Sobic003G044900--Sobic002G221900 Sobic003G044900--Sobic004G212800 Sobic003G044900--Sobic004G143700 Sobic003G044900--Sobic001G024200 Sobic003G044900--Sobic007G073400 Sobic002G221700 Sobic002G221700 Sobic003G044900--Sobic002G221700 Sobic003G015000 Sobic003G015000 Sobic003G044900--Sobic003G015000 Sobic003G044900--Sobic002G039500 Sobic009G214600 Sobic009G214600 Sobic003G044900--Sobic009G214600 Sobic007G073400--Sobic004G212800 Sobic007G073400--Sobic004G164600 Sobic007G073400--Sobic004G076732 Sobic008G009500 Sobic008G009500 Sobic007G073400--Sobic008G009500 Sobic009G113600 Sobic009G113600 Sobic007G073400--Sobic009G113600 Sobic008G031350 Sobic008G031350 Sobic007G073400--Sobic008G031350 Sobic008G042250 Sobic008G042250 Sobic007G073400--Sobic008G042250 Sobic005G110430 Sobic005G110430 Sobic007G073400--Sobic005G110430 Sobic007G073400--Sobic004G143700
Octagon: transcription factors


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