Gene annotation
| Transcriptome id | Sobic.007G156500.2,Sobic.007G156500.1 |
|---|---|
| Synonym | AMY1, ATAMY1, Sb07g023020 |
| Functional annotation | alpha-amylase precursor, putative, expressed |
| UniProt | A0A1B6PI09 , A0A1B6PI12 |
| Pfam | PF00128 PF07821 |
| Panther DB | PTHR10357 PTHR10357:SF153 |
| NCBI CDD | KOG0471; Alpha-amylase |
| KEGG Orthology | K01176; AMY, amyA, alpha-amylase |
| Gene Ontology | GO:0005975; carbohydrate metabolic process GO:0003824catalytic activity GO:0005509calcium ion binding GO:0004556alpha-amylase activity |
Orthologs (automatic annotation)
| TAIR | AT4G25000 : alpha-amylase-like |
|---|---|
| RAP-DB (Rice) | LOC_Os08g36910.1 : alpha-amylase precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a022221 , Zm00025a014064 , Zm00025a046841 , Zm00025a005424 |
| Brachypodium | KQK17525 , KQJ90515 , KQK01755 |
| Barley | HORVU7Hr1G091250.6 , HORVU7Hr1G091250.5 , HORVU7Hr1G091250.8 , HORVU7Hr1G091250.2 , HORVU7Hr1G091250.3 , HORVU7Hr1G091250.1 , HORVU7Hr1G091250.7 , HORVU7Hr1G091250.4 , HORVU5Hr1G068350.1 , HORVU5Hr1G068350.2 |
| Wheat | TraesCS5A02G464500 , TraesCS4D02G284400 , TraesCS5B02G236600 , TraesCS5B02G476000 , TraesCS6A02G334200 , TraesCS5D02G245000 , TraesCS7A02G383900 , TraesCS7B02G286100 , TraesCS7A02G383200 , TraesCS4B02G285600 , TraesCS4B02G285400 , TraesCS7D02G380400 , TraesCS7B02G286700 , TraesCS7B02G286000 , TraesCS7D02G379700 , TraesCS5B02G475700 , TraesCS5A02G238100 , TraesCS6B02G364900 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G108800 | auxin efflux carrier component, putative, expressed | - |
| 2 | Sobic.002G253500 | FAD dependent oxidoreductase domain containing protein, expressed | K00306: sarcosine oxidase / L-pipecolate oxidase |
| 3 | Sobic.009G231300 | drought induced 19 protein, putative, expressed | - |
| 4 | Sobic.002G007250 | - | - |
| 5 | Sobic.010G248200 | KID-containing protein, putative, expressed | - |
| 6 | Sobic.002G039500 | expressed protein | - |
| 7 | Sobic.001G345333 | - | - |
| 8 | Sobic.007G023700 | MA3 domain containing protein, expressed | - |
| 9 | Sobic.008G161401 | - | - |
| 10 | Sobic.008G009500 | pentatricopeptide, putative, expressed | - |
| 11 | Sobic.004G212800 | - | - |
| 12 | Sobic.002G221900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed | K05933: aminocyclopropanecarboxylate oxidase |
| 13 | Sobic.010G050600 | - | - |
| 14 | Sobic.005G003200 | sugar-responsive gene(PubMedID : 25496467)@asparagine synthetase, putative, expressed | K01953: asnB, asparagine synthase (glutamine-hydrolysing) |
| 15 | Sobic.009G180200 | SNF1-related protein kinase regulatory subunit beta-1, putative, expressed | K07199: 5'-AMP-activated protein kinase, regulatory beta subunit |
| 16 | Sobic.006G249000 | cysteine-rich receptor-like protein kinase 8 precursor, putative, expressed | K04733: interleukin-1 receptor-associated kinase 4 |
| 17 | Sobic.006G184300 | OsFBX148 - F-box domain containing protein, expressed | - |
| 18 | Sobic.007G073400 | SHR5-receptor-like kinase, putative, expressed | - |
| 19 | Sobic.004G221900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed | - |
| 20 | Sobic.K024000 | elongation factor Tu, putative, expressed | K03231: elongation factor 1-alpha |
Gene co-expression network
Octagon: transcription factors
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