Gene annotation
Transcriptome id Sobic.003G044900.1,Sobic.003G044900.2
Synonym AXR3, Sb03g003940, SbIAA8, auxin/indole-3-acetic acid (Aux/IAA), IAA17
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment" (PubMedID : 20499123)
OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed
UniProt A0A1B6Q194 , A0A1B6Q199
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF26
NCBI CDD -
KEGG Orthology K14484; auxin-responsive protein IAA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G04250 : AUX/IAA transcriptional regulator family protein
RAP-DB (Rice) LOC_Os05g08570.1,LOC_Os05g08570.2 : OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed
MaizeGDB (Corn) Zm00025a004598 , Zm00025a023196 , Zm00025a035750
Brachypodium KQK02999 , PNT61479 , KQK07226 , KQK07228 , KQK07227 , KQK14081 , KQK14082 , KQK14083 , KQJ85960 , KQJ85961
Barley HORVU3Hr1G022540.8 , HORVU3Hr1G022540.4 , HORVU3Hr1G022540.5 , HORVU3Hr1G022540.6 , HORVU3Hr1G022540.7 , HORVU3Hr1G022540.1 , HORVU3Hr1G022540.2 , HORVU1Hr1G025670.5 , HORVU1Hr1G025670.4 , HORVU1Hr1G025670.7 , HORVU1Hr1G025670.1 , HORVU1Hr1G025670.3 , HORVU1Hr1G025670.2 , HORVU1Hr1G025670.9 , HORVU1Hr1G025670.8 , HORVU1Hr1G025670.6 , HORVU5Hr1G093580.6 , HORVU5Hr1G093580.7 , HORVU5Hr1G093580.4 , HORVU5Hr1G093580.2 , HORVU5Hr1G093580.3 , HORVU5Hr1G093580.8
Wheat TraesCS3D02G123400 , TraesCS5B02G058500 , TraesCS3A02G121300 , TraesCS3A02G121300 , TraesCS5D02G069300 , TraesCS5D02G388300 , TraesCS5D02G388300 , TraesCS5B02G381900 , TraesCS1D02G119500 , TraesCS1B02G138100 , TraesCS5A02G378300 , TraesCS5A02G378300 , TraesCS3B02G140700 , TraesCS1A02G118400 , TraesCS1A02G118400
Populus -


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cDNA sequences
Sobic.003G044900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G221900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
2 Sobic.004G212800 - -
3 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
4 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
5 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
6 Sobic.002G221700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
7 Sobic.003G015000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
8 Sobic.002G039500 expressed protein -
9 Sobic.009G214600 possible lysine decarboxylase domain containing protein, expressed -
10 Sobic.004G164600 - -
11 Sobic.002G108800 auxin efflux carrier component, putative, expressed -
12 Sobic.005G012000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
13 Sobic.007G023700 MA3 domain containing protein, expressed -
14 Sobic.004G076732 - K14800: pre-rRNA-processing protein TSR2
15 Sobic.002G410200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.003G244800 - -
17 Sobic.003G093600 methyltransferase, putative, expressed -
18 Sobic.002G430500 phospholipase C, putative, expressed K05857: phosphatidylinositol phospholipase C, delta
19 Sobic.010G074500 -(PubMedID : 26320239)@phosphopantothenoylcysteine decarboxylase, putative, expressed K01598: PPCDC, phosphopantothenoylcysteine decarboxylase
20 Sobic.K016900 arginyl-tRNA--protein transferase 1, putative, expressed -


Gene co-expression network
sample Sobic003G044900 Sobic003G044900 Sobic002G221900 Sobic002G221900 Sobic003G044900--Sobic002G221900 Sobic004G212800 Sobic004G212800 Sobic003G044900--Sobic004G212800 Sobic004G143700 Sobic004G143700 Sobic003G044900--Sobic004G143700 Sobic001G024200 Sobic001G024200 Sobic003G044900--Sobic001G024200 Sobic007G073400 Sobic007G073400 Sobic003G044900--Sobic007G073400 Sobic002G221700 Sobic002G221700 Sobic003G044900--Sobic002G221700 Sobic003G015000 Sobic003G015000 Sobic003G044900--Sobic003G015000 Sobic002G039500 Sobic002G039500 Sobic003G044900--Sobic002G039500 Sobic009G214600 Sobic009G214600 Sobic003G044900--Sobic009G214600 Sobic007G023700 Sobic007G023700 Sobic002G221900--Sobic007G023700 Sobic002G108800 Sobic002G108800 Sobic002G221900--Sobic002G108800 Sobic007G156500 Sobic007G156500 Sobic002G221900--Sobic007G156500 Sobic002G221900--Sobic003G044900 Sobic002G253500 Sobic002G253500 Sobic002G221900--Sobic002G253500 Sobic002G221900--Sobic001G024200 Sobic002G221900--Sobic002G039500 Sobic002G221900--Sobic004G143700 Sobic003G204000 Sobic003G204000 Sobic002G221900--Sobic003G204000 Sobic004G212800--Sobic007G073400 Sobic004G164600 Sobic004G164600 Sobic004G212800--Sobic004G164600 Sobic004G212800--Sobic001G024200 Sobic001G345333 Sobic001G345333 Sobic004G212800--Sobic001G345333 Sobic002G007250 Sobic002G007250 Sobic004G212800--Sobic002G007250 Sobic010G248200 Sobic010G248200 Sobic004G212800--Sobic010G248200 Sobic004G076732 Sobic004G076732 Sobic004G212800--Sobic004G076732 Sobic008G161401 Sobic008G161401 Sobic004G212800--Sobic008G161401 Sobic004G112500 Sobic004G112500 Sobic004G212800--Sobic004G112500 Sobic004G143700--Sobic007G073400 Sobic004G143700--Sobic007G023700 Sobic004G143700--Sobic004G212800 Sobic002G283300 Sobic002G283300 Sobic004G143700--Sobic002G283300 Sobic004G143700--Sobic010G248200 Sobic004G143700--Sobic001G024200 Sobic003G093600 Sobic003G093600 Sobic004G143700--Sobic003G093600 Sobic001G439500 Sobic001G439500 Sobic004G143700--Sobic001G439500 Sobic001G543900 Sobic001G543900 Sobic004G143700--Sobic001G543900 Sobic001G024200--Sobic004G212800 Sobic007G211000 Sobic007G211000 Sobic001G024200--Sobic007G211000 Sobic001G024200--Sobic004G112500 Sobic001G024200--Sobic003G204000 Sobic001G272000 Sobic001G272000 Sobic001G024200--Sobic001G272000 Sobic001G024200--Sobic004G164600 SobicK009900 SobicK009900 Sobic001G024200--SobicK009900 Sobic001G024200--Sobic001G439500 Sobic001G024200--Sobic010G248200 Sobic007G073400--Sobic004G212800 Sobic007G073400--Sobic004G164600 Sobic007G073400--Sobic004G076732 Sobic008G009500 Sobic008G009500 Sobic007G073400--Sobic008G009500 Sobic009G113600 Sobic009G113600 Sobic007G073400--Sobic009G113600 Sobic008G031350 Sobic008G031350 Sobic007G073400--Sobic008G031350 Sobic008G042250 Sobic008G042250 Sobic007G073400--Sobic008G042250 Sobic005G110430 Sobic005G110430 Sobic007G073400--Sobic005G110430 Sobic007G073400--Sobic004G143700 Sobic002G221700--Sobic004G164600 Sobic002G221700--Sobic008G042250 Sobic001G253100 Sobic001G253100 Sobic002G221700--Sobic001G253100 Sobic002G221700--Sobic005G110430 Sobic002G221700--Sobic004G076732 Sobic002G221700--Sobic008G009500 Sobic002G221700--Sobic007G073400 Sobic008G157950 Sobic008G157950 Sobic002G221700--Sobic008G157950 Sobic002G221700--Sobic004G212800 Sobic009G228201 Sobic009G228201 Sobic003G015000--Sobic009G228201 Sobic009G257300 Sobic009G257300 Sobic003G015000--Sobic009G257300 Sobic003G015000--Sobic003G044900 Sobic008G079100 Sobic008G079100 Sobic003G015000--Sobic008G079100 Sobic003G015000--Sobic004G212800 Sobic003G015000--Sobic001G024200 Sobic003G128600 Sobic003G128600 Sobic003G015000--Sobic003G128600 Sobic009G059600 Sobic009G059600 Sobic003G015000--Sobic009G059600 Sobic003G015000--Sobic007G073400 Sobic002G039500--Sobic002G253500 Sobic002G039500--Sobic007G023700 Sobic002G039500--Sobic002G108800 Sobic002G039500--Sobic007G156500 Sobic002G039500--Sobic002G221900 Sobic002G039500--Sobic004G212800 Sobic009G231300 Sobic009G231300 Sobic002G039500--Sobic009G231300 Sobic002G039500--Sobic003G044900 Sobic002G039500--Sobic007G073400 Sobic009G214600--Sobic003G044900 Sobic007G094801 Sobic007G094801 Sobic009G214600--Sobic007G094801 SobicK016900 SobicK016900 Sobic009G214600--SobicK016900 Sobic004G016500 Sobic004G016500 Sobic009G214600--Sobic004G016500 Sobic004G240900 Sobic004G240900 Sobic009G214600--Sobic004G240900 Sobic006G133600 Sobic006G133600 Sobic009G214600--Sobic006G133600 Sobic006G213100 Sobic006G213100 Sobic009G214600--Sobic006G213100 Sobic002G150766 Sobic002G150766 Sobic009G214600--Sobic002G150766 Sobic001G046600 Sobic001G046600 Sobic009G214600--Sobic001G046600
Octagon: transcription factors


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