Gene annotation
Transcriptome id Sobic.005G012000.1
Synonym SnRK3.2, SbCIPK30, Sb05g001050,CBL-interacting protein kinases, CIPK2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Interacting factor of CBLs (PubMedID : 19860013)
CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C4P7T5
Pfam PF14531 PF03822
Panther DB PTHR24347 PTHR24347:SF230
NCBI CDD KOG0583; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0007165; signal transduction


Orthologs (automatic annotation)
TAIR AT5G58380 : SOS3-interacting protein 1
RAP-DB (Rice) LOC_Os12g02200.1 : CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a053821 , Zm00025a035815 , Zm00025a033494 , Zm00025a033298 , Zm00025a057779 , Zm00025a053831 , Zm00025a053836 , Zm00025a053837 , Zm00025a037607 , Zm00025a057782 , Zm00025a057783 , Zm00025a057780
Brachypodium KQJ92559 , KQJ92560 , KQJ89464 , KQK14651
Barley HORVU4Hr1G022630.1 , HORVU4Hr1G022630.2
Wheat TraesCS4D02G118500 , TraesCS5D02G144800
Populus -


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cDNA sequences
Sobic.005G012000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
2 Sobic.002G039500 expressed protein -
3 Sobic.006G184300 OsFBX148 - F-box domain containing protein, expressed -
4 Sobic.007G023700 MA3 domain containing protein, expressed -
5 Sobic.003G093600 methyltransferase, putative, expressed -
6 Sobic.008G126200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin binding protein, putative, expressed -
7 Sobic.006G194150 - -
8 Sobic.002G221700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
9 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
10 Sobic.010G042900 expressed protein -
11 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
12 Sobic.009G214600 possible lysine decarboxylase domain containing protein, expressed -
13 Sobic.002G108800 auxin efflux carrier component, putative, expressed -
14 Sobic.004G212800 - -
15 Sobic.005G187200 expressed protein -
16 Sobic.003G328800 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
17 Sobic.007G156500 alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
18 Sobic.004G164650 - -
19 Sobic.009G183500 expressed protein -
20 Sobic.004G271900 RMD5 homolog A, putative, expressed -


Gene co-expression network
sample Sobic005G012000 Sobic005G012000 Sobic003G044900 Sobic003G044900 Sobic005G012000--Sobic003G044900 Sobic002G039500 Sobic002G039500 Sobic005G012000--Sobic002G039500 Sobic006G184300 Sobic006G184300 Sobic005G012000--Sobic006G184300 Sobic007G023700 Sobic007G023700 Sobic005G012000--Sobic007G023700 Sobic003G093600 Sobic003G093600 Sobic005G012000--Sobic003G093600 Sobic008G126200 Sobic008G126200 Sobic005G012000--Sobic008G126200 Sobic006G194150 Sobic006G194150 Sobic005G012000--Sobic006G194150 Sobic002G221700 Sobic002G221700 Sobic005G012000--Sobic002G221700 Sobic007G073400 Sobic007G073400 Sobic005G012000--Sobic007G073400 Sobic002G221900 Sobic002G221900 Sobic003G044900--Sobic002G221900 Sobic004G212800 Sobic004G212800 Sobic003G044900--Sobic004G212800 Sobic004G143700 Sobic004G143700 Sobic003G044900--Sobic004G143700 Sobic001G024200 Sobic001G024200 Sobic003G044900--Sobic001G024200 Sobic003G044900--Sobic007G073400 Sobic003G044900--Sobic002G221700 Sobic003G015000 Sobic003G015000 Sobic003G044900--Sobic003G015000 Sobic003G044900--Sobic002G039500 Sobic009G214600 Sobic009G214600 Sobic003G044900--Sobic009G214600 Sobic002G253500 Sobic002G253500 Sobic002G039500--Sobic002G253500 Sobic002G039500--Sobic007G023700 Sobic002G108800 Sobic002G108800 Sobic002G039500--Sobic002G108800 Sobic007G156500 Sobic007G156500 Sobic002G039500--Sobic007G156500 Sobic002G039500--Sobic002G221900 Sobic002G039500--Sobic004G212800 Sobic009G231300 Sobic009G231300 Sobic002G039500--Sobic009G231300 Sobic002G039500--Sobic003G044900 Sobic002G039500--Sobic007G073400 Sobic006G184300--Sobic002G108800 Sobic006G184300--Sobic007G023700 Sobic006G184300--Sobic007G156500 Sobic006G184300--Sobic002G039500 Sobic006G184300--Sobic008G126200 Sobic004G221900 Sobic004G221900 Sobic006G184300--Sobic004G221900 Sobic006G184300--Sobic005G012000 Sobic009G257300 Sobic009G257300 Sobic006G184300--Sobic009G257300 Sobic006G184300--Sobic003G093600 Sobic007G023700--Sobic003G093600 Sobic007G023700--Sobic002G039500 Sobic009G180200 Sobic009G180200 Sobic007G023700--Sobic009G180200 Sobic007G023700--Sobic004G143700 Sobic007G023700--Sobic002G108800 Sobic007G023700--Sobic002G221900 Sobic007G023700--Sobic007G156500 Sobic001G347600 Sobic001G347600 Sobic007G023700--Sobic001G347600 Sobic007G023700--Sobic006G184300 Sobic003G093600--Sobic007G023700 Sobic009G022200 Sobic009G022200 Sobic003G093600--Sobic009G022200 Sobic004G271900 Sobic004G271900 Sobic003G093600--Sobic004G271900 Sobic007G205800 Sobic007G205800 Sobic003G093600--Sobic007G205800 Sobic003G093600--Sobic004G143700 Sobic009G156000 Sobic009G156000 Sobic003G093600--Sobic009G156000 Sobic009G087800 Sobic009G087800 Sobic003G093600--Sobic009G087800 Sobic003G258400 Sobic003G258400 Sobic003G093600--Sobic003G258400 Sobic001G424700 Sobic001G424700 Sobic003G093600--Sobic001G424700 Sobic008G126200--Sobic006G184300 SobicK024000 SobicK024000 Sobic008G126200--SobicK024000 Sobic002G270300 Sobic002G270300 Sobic008G126200--Sobic002G270300 Sobic008G126200--Sobic007G023700 Sobic008G009500 Sobic008G009500 Sobic008G126200--Sobic008G009500 Sobic008G126200--Sobic001G347600 Sobic008G126200--Sobic005G012000 Sobic008G126200--Sobic003G093600 Sobic008G126200--Sobic002G108800 Sobic001G032100 Sobic001G032100 Sobic006G194150--Sobic001G032100 Sobic006G194150--Sobic005G012000 Sobic005G085600 Sobic005G085600 Sobic006G194150--Sobic005G085600 Sobic006G194300 Sobic006G194300 Sobic006G194150--Sobic006G194300 Sobic003G296600 Sobic003G296600 Sobic006G194150--Sobic003G296600 Sobic006G194150--Sobic006G184300 Sobic003G293900 Sobic003G293900 Sobic006G194150--Sobic003G293900 Sobic006G194150--Sobic008G126200 Sobic003G397300 Sobic003G397300 Sobic006G194150--Sobic003G397300 Sobic004G164600 Sobic004G164600 Sobic002G221700--Sobic004G164600 Sobic008G042250 Sobic008G042250 Sobic002G221700--Sobic008G042250 Sobic001G253100 Sobic001G253100 Sobic002G221700--Sobic001G253100 Sobic005G110430 Sobic005G110430 Sobic002G221700--Sobic005G110430 Sobic004G076732 Sobic004G076732 Sobic002G221700--Sobic004G076732 Sobic002G221700--Sobic008G009500 Sobic002G221700--Sobic007G073400 Sobic008G157950 Sobic008G157950 Sobic002G221700--Sobic008G157950 Sobic002G221700--Sobic004G212800 Sobic007G073400--Sobic004G212800 Sobic007G073400--Sobic004G164600 Sobic007G073400--Sobic004G076732 Sobic007G073400--Sobic008G009500 Sobic009G113600 Sobic009G113600 Sobic007G073400--Sobic009G113600 Sobic008G031350 Sobic008G031350 Sobic007G073400--Sobic008G031350 Sobic007G073400--Sobic008G042250 Sobic007G073400--Sobic005G110430 Sobic007G073400--Sobic004G143700
Octagon: transcription factors


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