Gene annotation
Transcriptome id Sobic.003G328800.1
Synonym Sb03g037490, TUB6
Functional annotation tubulin/FtsZ domain containing protein, putative, expressed
UniProt C5XMJ4
Pfam PF03953 PF00091
Panther DB PTHR11588 PTHR11588:SF114
NCBI CDD -
KEGG Orthology K07375; tubulin beta
Gene Ontology GO:0003924; GTPase activity GO:0007017microtubule-based process GO:0005874microtubule


Orthologs (automatic annotation)
TAIR AT5G12250 : beta-6 tubulin
RAP-DB (Rice) LOC_Os01g59150.1 : tubulin/FtsZ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000132 , Zm00025a030432 , Zm00025a012119 , Zm00025a024856 , Zm00025a039825 , Zm00025a008433 , Zm00025a024200 , Zm00025a001989 , Zm00025a041941 , Zm00025a016660 , Zm00025a035181 , Zm00025a004646 , Zm00025a007533 , Zm00025a017188 , Zm00025a027156 , Zm00025a019054 , Zm00025a051791 , Zm00025a008427 , Zm00025a008163
Brachypodium KQK17085 , KQK13880 , KQK10219 , KQK12908 , KQK24113 , KQK06257 , KQJ93503 , KQK05638 , KQK03976
Barley HORVU3Hr1G078940.3 , HORVU3Hr1G078940.2 , HORVU3Hr1G078940.1 , HORVU3Hr1G078940.7 , HORVU3Hr1G078940.6 , HORVU3Hr1G078940.5 , HORVU3Hr1G078940.4 , HORVU1Hr1G068170.1 , HORVU1Hr1G068170.3 , HORVU1Hr1G068170.2 , HORVU0Hr1G026030.4 , HORVU0Hr1G026030.3 , HORVU0Hr1G026030.2 , HORVU1Hr1G064870.4 , HORVU1Hr1G064870.5 , HORVU1Hr1G064870.6 , HORVU1Hr1G064870.7 , HORVU1Hr1G064870.1 , HORVU1Hr1G064870.2 , HORVU1Hr1G064870.3 , HORVU1Hr1G064870.9 , HORVU4Hr1G087740.1 , HORVU4Hr1G087740.3 , HORVU4Hr1G087740.4 , HORVU4Hr1G002530.1 , HORVU4Hr1G002530.2 , HORVU4Hr1G002530.3 , HORVU4Hr1G002530.4 , HORVU4Hr1G002530.5 , HORVU4Hr1G002530.6 , HORVU4Hr1G087740.5 , HORVU4Hr1G087740.2 , HORVU5Hr1G100900.1 , HORVU5Hr1G100900.2 , HORVU5Hr1G100900.5 , HORVU5Hr1G100900.4 , HORVU5Hr1G100900.6 , HORVU7Hr1G107100.4 , HORVU7Hr1G107100.2 , HORVU7Hr1G107100.3 , HORVU7Hr1G107100.1 , HORVU4Hr1G002530.7 , HORVU6Hr1G027620.5 , HORVU6Hr1G027620.4 , HORVU6Hr1G027620.3 , HORVU6Hr1G027620.2 , HORVU6Hr1G027620.1
Wheat TraesCS4D02G015400 , TraesCS7A02G466600 , TraesCS4B02G017100 , TraesCS3B02G363500 , TraesCS6D02G130500 , TraesCS6D02G130500 , TraesCS4A02G296600 , TraesCS1B02G320800 , TraesCS1A02G309700 , TraesCS5A02G416400 , TraesCS5A02G416400 , TraesCS1D02G258800 , TraesCS1B02G269400 , TraesCS5D02G424100 , TraesCS6B02G169300 , TraesCS6B02G169300 , TraesCS4B02G366500 , TraesCS3A02G333300 , TraesCS3B02G026800 , TraesCSU02G137900 , TraesCS5B02G418700 , TraesCS5A02G534300 , TraesCS3D02G326900 , TraesCS1A02G258800 , TraesCS1D02G309200 , TraesCS7D02G454200
Populus PNT13773 , PNT29533 , PNT29532 , PNT29534 , PNT60296 , PNT56929 , PNT56931 , PNT56930 , PNT56932 , PNT19996 , PNT19997 , PNT45227 , PNT19995


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cDNA sequences
Sobic.003G328800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G213100 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase
2 Sobic.005G012000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
3 Sobic.004G164650 - -
4 Sobic.003G397300 - -
5 Sobic.008G126200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin binding protein, putative, expressed -
6 Sobic.003G380500 expressed protein -
7 Sobic.001G082300 cytochrome P450, putative, expressed -
8 Sobic.008G136000 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
9 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
10 Sobic.001G179000 DNA-directed RNA polymerase subunit, putative, expressed K03014: RPB6, DNA-directed RNA polymerases I, II, and III subunit RPABC2
11 Sobic.006G262600 expressed protein -
12 Sobic.002G221700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
13 Sobic.004G154600 expressed protein -
14 Sobic.008G108900 GRF zinc finger family protein, expressed -
15 Sobic.006G194150 - -
16 Sobic.009G214600 possible lysine decarboxylase domain containing protein, expressed -
17 Sobic.002G017300 expressed protein -
18 Sobic.002G250400 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
19 Sobic.004G220300 "Phenylalanine ammonia-lyase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phenylalanine ammonia-lyase, putative, expressed K13064: phenylalanine/tyrosine ammonia-lyase
20 Sobic.006G133600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G328800 Sobic003G328800 Sobic006G213100 Sobic006G213100 Sobic003G328800--Sobic006G213100 Sobic005G012000 Sobic005G012000 Sobic003G328800--Sobic005G012000 Sobic004G164650 Sobic004G164650 Sobic003G328800--Sobic004G164650 Sobic003G397300 Sobic003G397300 Sobic003G328800--Sobic003G397300 Sobic008G126200 Sobic008G126200 Sobic003G328800--Sobic008G126200 Sobic003G380500 Sobic003G380500 Sobic003G328800--Sobic003G380500 Sobic001G082300 Sobic001G082300 Sobic003G328800--Sobic001G082300 Sobic008G136000 Sobic008G136000 Sobic003G328800--Sobic008G136000 Sobic003G044900 Sobic003G044900 Sobic003G328800--Sobic003G044900 Sobic006G133600 Sobic006G133600 Sobic006G213100--Sobic006G133600 Sobic009G214600 Sobic009G214600 Sobic006G213100--Sobic009G214600 Sobic006G213100--Sobic003G397300 Sobic006G213100--Sobic003G328800 Sobic007G191100 Sobic007G191100 Sobic006G213100--Sobic007G191100 Sobic001G056300 Sobic001G056300 Sobic006G213100--Sobic001G056300 Sobic006G213100--Sobic003G044900 Sobic004G220300 Sobic004G220300 Sobic006G213100--Sobic004G220300 Sobic007G099500 Sobic007G099500 Sobic006G213100--Sobic007G099500 Sobic005G012000--Sobic003G044900 Sobic002G039500 Sobic002G039500 Sobic005G012000--Sobic002G039500 Sobic006G184300 Sobic006G184300 Sobic005G012000--Sobic006G184300 Sobic007G023700 Sobic007G023700 Sobic005G012000--Sobic007G023700 Sobic003G093600 Sobic003G093600 Sobic005G012000--Sobic003G093600 Sobic005G012000--Sobic008G126200 Sobic006G194150 Sobic006G194150 Sobic005G012000--Sobic006G194150 Sobic002G221700 Sobic002G221700 Sobic005G012000--Sobic002G221700 Sobic007G073400 Sobic007G073400 Sobic005G012000--Sobic007G073400 Sobic007G115000 Sobic007G115000 Sobic004G164650--Sobic007G115000 Sobic002G285200 Sobic002G285200 Sobic004G164650--Sobic002G285200 Sobic005G212600 Sobic005G212600 Sobic004G164650--Sobic005G212600 Sobic004G076732 Sobic004G076732 Sobic004G164650--Sobic004G076732 Sobic001G253100 Sobic001G253100 Sobic004G164650--Sobic001G253100 Sobic008G108900 Sobic008G108900 Sobic004G164650--Sobic008G108900 Sobic004G195700 Sobic004G195700 Sobic004G164650--Sobic004G195700 Sobic006G132200 Sobic006G132200 Sobic004G164650--Sobic006G132200 Sobic003G424100 Sobic003G424100 Sobic004G164650--Sobic003G424100 Sobic003G397300--Sobic006G213100 Sobic003G397300--Sobic006G194150 Sobic003G397300--Sobic003G328800 Sobic003G397300--Sobic009G214600 Sobic002G279100 Sobic002G279100 Sobic003G397300--Sobic002G279100 Sobic007G189800 Sobic007G189800 Sobic003G397300--Sobic007G189800 Sobic009G064766 Sobic009G064766 Sobic003G397300--Sobic009G064766 Sobic001G194000 Sobic001G194000 Sobic003G397300--Sobic001G194000 Sobic005G085600 Sobic005G085600 Sobic003G397300--Sobic005G085600 Sobic008G126200--Sobic006G184300 SobicK024000 SobicK024000 Sobic008G126200--SobicK024000 Sobic002G270300 Sobic002G270300 Sobic008G126200--Sobic002G270300 Sobic008G126200--Sobic007G023700 Sobic008G009500 Sobic008G009500 Sobic008G126200--Sobic008G009500 Sobic001G347600 Sobic001G347600 Sobic008G126200--Sobic001G347600 Sobic008G126200--Sobic005G012000 Sobic008G126200--Sobic003G093600 Sobic002G108800 Sobic002G108800 Sobic008G126200--Sobic002G108800 Sobic006G262600 Sobic006G262600 Sobic003G380500--Sobic006G262600 Sobic002G007200 Sobic002G007200 Sobic003G380500--Sobic002G007200 Sobic001G179000 Sobic001G179000 Sobic003G380500--Sobic001G179000 Sobic003G380500--Sobic002G221700 Sobic003G380500--Sobic007G191100 Sobic009G164900 Sobic009G164900 Sobic003G380500--Sobic009G164900 Sobic004G250700 Sobic004G250700 Sobic003G380500--Sobic004G250700 Sobic007G195400 Sobic007G195400 Sobic003G380500--Sobic007G195400 Sobic007G008800 Sobic007G008800 Sobic003G380500--Sobic007G008800 Sobic002G377000 Sobic002G377000 Sobic001G082300--Sobic002G377000 Sobic001G032100 Sobic001G032100 Sobic001G082300--Sobic001G032100 Sobic002G017300 Sobic002G017300 Sobic001G082300--Sobic002G017300 Sobic001G082300--Sobic008G126200 Sobic003G296600 Sobic003G296600 Sobic001G082300--Sobic003G296600 Sobic001G082300--Sobic006G194150 Sobic001G082300--Sobic003G328800 Sobic004G164500 Sobic004G164500 Sobic001G082300--Sobic004G164500 Sobic001G082300--Sobic006G184300 Sobic001G428400 Sobic001G428400 Sobic008G136000--Sobic001G428400 Sobic008G136000--Sobic002G270300 Sobic003G024800 Sobic003G024800 Sobic008G136000--Sobic003G024800 Sobic008G136000--Sobic003G328800 Sobic004G349100 Sobic004G349100 Sobic008G136000--Sobic004G349100 Sobic004G077000 Sobic004G077000 Sobic008G136000--Sobic004G077000 Sobic001G512600 Sobic001G512600 Sobic008G136000--Sobic001G512600 Sobic001G420700 Sobic001G420700 Sobic008G136000--Sobic001G420700 Sobic010G163900 Sobic010G163900 Sobic008G136000--Sobic010G163900 Sobic002G221900 Sobic002G221900 Sobic003G044900--Sobic002G221900 Sobic004G212800 Sobic004G212800 Sobic003G044900--Sobic004G212800 Sobic004G143700 Sobic004G143700 Sobic003G044900--Sobic004G143700 Sobic001G024200 Sobic001G024200 Sobic003G044900--Sobic001G024200 Sobic003G044900--Sobic007G073400 Sobic003G044900--Sobic002G221700 Sobic003G015000 Sobic003G015000 Sobic003G044900--Sobic003G015000 Sobic003G044900--Sobic002G039500 Sobic003G044900--Sobic009G214600
Octagon: transcription factors


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