Gene annotation
Transcriptome id Sobic.002G250400.1
Synonym HMGR1, Sb02g028630, HMG1
Functional annotation 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed
UniProt C5X4H9
Pfam PF00368
Panther DB PTHR10572 PTHR10572:SF10
NCBI CDD -
KEGG Orthology K00021; hydroxymethylglutaryl-CoA reductase (NADPH)
Gene Ontology GO:0015936; coenzyme A metabolic process GO:0004420hydroxymethylglutaryl-CoA reductase (NADPH) activity


Orthologs (automatic annotation)
TAIR AT1G76490 : hydroxy methylglutaryl CoA reductase 1
RAP-DB (Rice) LOC_Os09g31970.1 : 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed
MaizeGDB (Corn) Zm00025a019785 , Zm00025a033818 , Zm00025a014227 , Zm00025a047480
Brachypodium KQJ98956 , KQJ90788
Barley HORVU7Hr1G051260.7 , HORVU7Hr1G051260.6 , HORVU7Hr1G051260.5 , HORVU7Hr1G051260.3 , HORVU7Hr1G051260.2 , HORVU7Hr1G051260.1 , HORVU7Hr1G051260.8 , HORVU5Hr1G073970.1 , HORVU5Hr1G073970.3 , HORVU5Hr1G073970.2 , HORVU5Hr1G073970.5 , HORVU5Hr1G073970.4 , HORVU5Hr1G073970.6
Wheat TraesCS7B02G142500 , TraesCS5B02G269600 , TraesCS7A02G248800 , TraesCS7A02G248800 , TraesCS5A02G269300 , TraesCS5D02G277500 , TraesCS7D02G247800 , TraesCS7D02G247800
Populus -


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cDNA sequences
Sobic.002G250400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G262600 expressed protein -
2 Sobic.001G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@squalene synthetase, putative, expressed K00801: farnesyl-diphosphate farnesyltransferase
3 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
4 Sobic.004G083200 targeting protein for Xklp2, putative, expressed -
5 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
6 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
7 Sobic.003G380500 expressed protein -
8 Sobic.003G328800 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
9 Sobic.002G007200 plastocyanin-like domain containing protein, putative, expressed -
10 Sobic.002G033600 Leucine Rich Repeat family protein, expressed -
11 Sobic.002G177400 expressed protein -
12 Sobic.003G229400 CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed -
13 Sobic.007G088900 expressed protein -
14 Sobic.002G088700 domain of unknown function domain containing protein, expressed -
15 Sobic.007G139400 OsFBL33 - F-box domain and LRR containing protein, expressed -
16 Sobic.003G354100 expressed protein -
17 Sobic.006G033700 wax synthase isoform 1, putative, expressed -
18 Sobic.007G188900 AP2 domain containing protein, expressed -
19 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
20 Sobic.004G088400 GTPase-activating protein, putative, expressed -


Gene co-expression network
sample Sobic002G250400 Sobic002G250400 Sobic006G262600 Sobic006G262600 Sobic002G250400--Sobic006G262600 Sobic001G049600 Sobic001G049600 Sobic002G250400--Sobic001G049600 Sobic007G191100 Sobic007G191100 Sobic002G250400--Sobic007G191100 Sobic004G083200 Sobic004G083200 Sobic002G250400--Sobic004G083200 Sobic002G334600 Sobic002G334600 Sobic002G250400--Sobic002G334600 Sobic009G030300 Sobic009G030300 Sobic002G250400--Sobic009G030300 Sobic003G380500 Sobic003G380500 Sobic002G250400--Sobic003G380500 Sobic003G328800 Sobic003G328800 Sobic002G250400--Sobic003G328800 Sobic002G007200 Sobic002G007200 Sobic002G250400--Sobic002G007200 Sobic006G262600--Sobic002G007200 Sobic006G262600--Sobic003G380500 Sobic006G133600 Sobic006G133600 Sobic006G262600--Sobic006G133600 Sobic002G367300 Sobic002G367300 Sobic006G262600--Sobic002G367300 Sobic006G262600--Sobic001G049600 Sobic004G154600 Sobic004G154600 Sobic006G262600--Sobic004G154600 Sobic006G262600--Sobic002G250400 Sobic004G250700 Sobic004G250700 Sobic006G262600--Sobic004G250700 Sobic009G059600 Sobic009G059600 Sobic006G262600--Sobic009G059600 Sobic004G061900 Sobic004G061900 Sobic001G049600--Sobic004G061900 Sobic004G242700 Sobic004G242700 Sobic001G049600--Sobic004G242700 Sobic002G033600 Sobic002G033600 Sobic001G049600--Sobic002G033600 Sobic002G076400 Sobic002G076400 Sobic001G049600--Sobic002G076400 Sobic007G188900 Sobic007G188900 Sobic001G049600--Sobic007G188900 Sobic001G049600--Sobic007G191100 Sobic006G092800 Sobic006G092800 Sobic001G049600--Sobic006G092800 Sobic004G030700 Sobic004G030700 Sobic001G049600--Sobic004G030700 Sobic001G049600--Sobic006G262600 Sobic007G191100--Sobic004G061900 Sobic007G191100--Sobic002G076400 Sobic008G034600 Sobic008G034600 Sobic007G191100--Sobic008G034600 Sobic010G077600 Sobic010G077600 Sobic007G191100--Sobic010G077600 Sobic010G263800 Sobic010G263800 Sobic007G191100--Sobic010G263800 Sobic007G011400 Sobic007G011400 Sobic007G191100--Sobic007G011400 Sobic010G074500 Sobic010G074500 Sobic007G191100--Sobic010G074500 Sobic003G093600 Sobic003G093600 Sobic007G191100--Sobic003G093600 Sobic008G117200 Sobic008G117200 Sobic007G191100--Sobic008G117200 Sobic002G088700 Sobic002G088700 Sobic004G083200--Sobic002G088700 Sobic004G083200--Sobic002G250400 Sobic004G083200--Sobic003G380500 Sobic004G122000 Sobic004G122000 Sobic004G083200--Sobic004G122000 Sobic010G046400 Sobic010G046400 Sobic004G083200--Sobic010G046400 Sobic008G099500 Sobic008G099500 Sobic004G083200--Sobic008G099500 Sobic004G083200--Sobic003G328800 Sobic004G349100 Sobic004G349100 Sobic004G083200--Sobic004G349100 Sobic001G281700 Sobic001G281700 Sobic004G083200--Sobic001G281700 Sobic002G223300 Sobic002G223300 Sobic002G334600--Sobic002G223300 Sobic002G334600--Sobic009G030300 Sobic007G139400 Sobic007G139400 Sobic002G334600--Sobic007G139400 Sobic002G334600--Sobic007G188900 Sobic003G132700 Sobic003G132700 Sobic002G334600--Sobic003G132700 Sobic002G089900 Sobic002G089900 Sobic002G334600--Sobic002G089900 Sobic003G354100 Sobic003G354100 Sobic002G334600--Sobic003G354100 Sobic009G044900 Sobic009G044900 Sobic002G334600--Sobic009G044900 Sobic002G157200 Sobic002G157200 Sobic002G334600--Sobic002G157200 Sobic002G177400 Sobic002G177400 Sobic009G030300--Sobic002G177400 Sobic001G226000 Sobic001G226000 Sobic009G030300--Sobic001G226000 Sobic009G030300--Sobic004G061900 Sobic009G030300--Sobic009G044900 Sobic004G013600 Sobic004G013600 Sobic009G030300--Sobic004G013600 Sobic004G088400 Sobic004G088400 Sobic009G030300--Sobic004G088400 Sobic009G030300--Sobic008G117200 Sobic009G030300--Sobic002G334600 Sobic008G129700 Sobic008G129700 Sobic009G030300--Sobic008G129700 Sobic003G380500--Sobic006G262600 Sobic003G380500--Sobic002G007200 Sobic001G179000 Sobic001G179000 Sobic003G380500--Sobic001G179000 Sobic002G221700 Sobic002G221700 Sobic003G380500--Sobic002G221700 Sobic003G380500--Sobic007G191100 Sobic009G164900 Sobic009G164900 Sobic003G380500--Sobic009G164900 Sobic003G380500--Sobic004G250700 Sobic007G195400 Sobic007G195400 Sobic003G380500--Sobic007G195400 Sobic007G008800 Sobic007G008800 Sobic003G380500--Sobic007G008800 Sobic006G213100 Sobic006G213100 Sobic003G328800--Sobic006G213100 Sobic005G012000 Sobic005G012000 Sobic003G328800--Sobic005G012000 Sobic004G164650 Sobic004G164650 Sobic003G328800--Sobic004G164650 Sobic003G397300 Sobic003G397300 Sobic003G328800--Sobic003G397300 Sobic008G126200 Sobic008G126200 Sobic003G328800--Sobic008G126200 Sobic003G328800--Sobic003G380500 Sobic001G082300 Sobic001G082300 Sobic003G328800--Sobic001G082300 Sobic008G136000 Sobic008G136000 Sobic003G328800--Sobic008G136000 Sobic003G044900 Sobic003G044900 Sobic003G328800--Sobic003G044900 Sobic002G007200--Sobic006G262600 Sobic002G007200--Sobic003G380500 Sobic002G007200--Sobic009G164900 Sobic002G007200--Sobic006G133600 Sobic002G007200--Sobic002G334600 Sobic009G064900 Sobic009G064900 Sobic002G007200--Sobic009G064900 Sobic002G007200--Sobic002G367300 Sobic004G287800 Sobic004G287800 Sobic002G007200--Sobic004G287800 Sobic004G205500 Sobic004G205500 Sobic002G007200--Sobic004G205500
Octagon: transcription factors


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