Gene annotation
Transcriptome id Sobic.003G229400.2,Sobic.003G229400.1
Synonym ATMPK20, Sb03g028740, MPK20
Functional annotation CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
UniProt A0A1B6Q4T5 , A0A1B6Q4T4
Pfam PF06293 PF00069
Panther DB PTHR24055 PTHR24055:SF195
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016773; phosphotransferase activity, alcohol group as acceptor GO:0016020membrane GO:0005524ATP binding GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G42880 : MAP kinase 20
RAP-DB (Rice) LOC_Os01g43910.1 : CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
MaizeGDB (Corn) Zm00025a038623 , Zm00025a044590
Brachypodium KQK04693 , KQK04694 , KQK04695 , KQK08860 , KQK04843 , KQK04845 , KQK04844 , KQK08859 , PNT75923 , PNT70695 , PNT70696
Barley HORVU1Hr1G091890.8 , HORVU1Hr1G091890.9 , HORVU1Hr1G091890.2 , HORVU3Hr1G056200.12 , HORVU3Hr1G056200.13 , HORVU3Hr1G056200.10 , HORVU3Hr1G056200.11 , HORVU3Hr1G056200.16 , HORVU3Hr1G056200.17 , HORVU3Hr1G056200.14 , HORVU3Hr1G056200.15 , HORVU3Hr1G056200.8 , HORVU3Hr1G056200.9 , HORVU3Hr1G056200.1 , HORVU3Hr1G056200.2 , HORVU3Hr1G056200.3 , HORVU3Hr1G056200.4 , HORVU3Hr1G056200.5 , HORVU3Hr1G056200.6 , HORVU3Hr1G056200.7 , HORVU1Hr1G091890.3 , HORVU1Hr1G091890.1 , HORVU1Hr1G091890.6 , HORVU1Hr1G091890.7 , HORVU1Hr1G091890.4 , HORVU1Hr1G091890.5 , HORVU3Hr1G060390.5 , HORVU3Hr1G060390.3 , HORVU3Hr1G060390.2 , HORVU3Hr1G060390.1 , HORVU3Hr1G060390.9 , HORVU3Hr1G060390.8 , HORVU3Hr1G060390.7 , HORVU3Hr1G060390.6 , HORVU3Hr1G060390.4 , HORVU1Hr1G091890.10 , HORVU1Hr1G091890.11 , HORVU1Hr1G091890.12 , HORVU3Hr1G060390.18 , HORVU3Hr1G060390.17 , HORVU3Hr1G060390.16 , HORVU3Hr1G060390.15 , HORVU3Hr1G060390.14 , HORVU3Hr1G060390.13 , HORVU3Hr1G060390.12 , HORVU3Hr1G060390.11 , HORVU3Hr1G060390.10
Wheat TraesCS3B02G256700 , TraesCS1A02G421000 , TraesCS3D02G225600 , TraesCS3A02G228000 , TraesCS3A02G242100 , TraesCS1B02G452200 , TraesCS1D02G428900 , TraesCS3D02G242200 , TraesCS3D02G242200 , TraesCS3B02G270200 , TraesCS3A02G242100
Populus PNT25769 , PNT14423 , PNT14425 , PNT14424 , PNT14426 , PNT25771 , PNT25770


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cDNA sequences
Sobic.003G229400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G073600 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@auxin response factor, putative, expressed -
2 Sobic.003G128600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNAJ heat shock N-terminal domain-containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
3 Sobic.006G215100 expressed protein -
4 Sobic.010G035801 - -
5 Sobic.006G100000 pentatricopeptide, putative, expressed -
6 Sobic.004G197900 - -
7 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
8 Sobic.006G130200 expressed protein -
9 Sobic.002G033600 Leucine Rich Repeat family protein, expressed -
10 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
11 Sobic.009G032300 CGMC_GSK.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
12 Sobic.009G257300 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
13 Sobic.010G237650 - -
14 Sobic.010G209700 expressed protein -
15 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
16 Sobic.001G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@squalene synthetase, putative, expressed K00801: farnesyl-diphosphate farnesyltransferase
17 Sobic.004G242700 heat shock protein DnaJ, putative, expressed -
18 Sobic.006G116300 OsFBDUF22 - F-box and DUF domain containing protein, expressed -
19 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
20 Sobic.004G026100 tRNA methyltransferase, putative, expressed K03439: trmB, METTL1, tRNA (guanine-N7-)-methyltransferase


Gene co-expression network
sample Sobic003G229400 Sobic003G229400 Sobic010G073600 Sobic010G073600 Sobic003G229400--Sobic010G073600 Sobic003G128600 Sobic003G128600 Sobic003G229400--Sobic003G128600 Sobic006G215100 Sobic006G215100 Sobic003G229400--Sobic006G215100 Sobic010G035801 Sobic010G035801 Sobic003G229400--Sobic010G035801 Sobic006G100000 Sobic006G100000 Sobic003G229400--Sobic006G100000 Sobic004G197900 Sobic004G197900 Sobic003G229400--Sobic004G197900 Sobic007G191100 Sobic007G191100 Sobic003G229400--Sobic007G191100 Sobic006G130200 Sobic006G130200 Sobic003G229400--Sobic006G130200 Sobic002G033600 Sobic002G033600 Sobic003G229400--Sobic002G033600 Sobic010G073600--Sobic006G215100 Sobic010G237650 Sobic010G237650 Sobic010G073600--Sobic010G237650 Sobic010G073600--Sobic003G229400 Sobic010G073600--Sobic006G130200 Sobic004G218300 Sobic004G218300 Sobic010G073600--Sobic004G218300 Sobic005G128000 Sobic005G128000 Sobic010G073600--Sobic005G128000 Sobic003G289100 Sobic003G289100 Sobic010G073600--Sobic003G289100 Sobic006G144000 Sobic006G144000 Sobic010G073600--Sobic006G144000 Sobic003G402900 Sobic003G402900 Sobic010G073600--Sobic003G402900 Sobic009G059600 Sobic009G059600 Sobic003G128600--Sobic009G059600 Sobic004G169501 Sobic004G169501 Sobic003G128600--Sobic004G169501 Sobic003G015000 Sobic003G015000 Sobic003G128600--Sobic003G015000 Sobic002G140800 Sobic002G140800 Sobic003G128600--Sobic002G140800 Sobic004G286900 Sobic004G286900 Sobic003G128600--Sobic004G286900 Sobic009G257300 Sobic009G257300 Sobic003G128600--Sobic009G257300 Sobic004G164600 Sobic004G164600 Sobic003G128600--Sobic004G164600 Sobic008G068800 Sobic008G068800 Sobic003G128600--Sobic008G068800 Sobic008G117200 Sobic008G117200 Sobic003G128600--Sobic008G117200 Sobic006G215100--Sobic010G073600 Sobic006G215100--Sobic004G218300 Sobic006G215100--Sobic010G237650 Sobic006G048300 Sobic006G048300 Sobic006G215100--Sobic006G048300 Sobic003G398400 Sobic003G398400 Sobic006G215100--Sobic003G398400 Sobic006G215100--Sobic006G130200 Sobic002G147100 Sobic002G147100 Sobic006G215100--Sobic002G147100 Sobic006G215100--Sobic003G402900 Sobic010G074900 Sobic010G074900 Sobic006G215100--Sobic010G074900 Sobic010G209700 Sobic010G209700 Sobic010G035801--Sobic010G209700 Sobic009G228400 Sobic009G228400 Sobic010G035801--Sobic009G228400 Sobic010G035801--Sobic003G229400 Sobic010G035801--Sobic004G218300 Sobic002G203600 Sobic002G203600 Sobic010G035801--Sobic002G203600 Sobic010G035801--Sobic006G100000 Sobic004G042900 Sobic004G042900 Sobic010G035801--Sobic004G042900 Sobic010G035801--Sobic006G215100 Sobic008G152900 Sobic008G152900 Sobic010G035801--Sobic008G152900 Sobic009G040800 Sobic009G040800 Sobic006G100000--Sobic009G040800 Sobic009G015800 Sobic009G015800 Sobic006G100000--Sobic009G015800 Sobic003G442000 Sobic003G442000 Sobic006G100000--Sobic003G442000 Sobic006G100000--Sobic010G209700 Sobic003G343600 Sobic003G343600 Sobic006G100000--Sobic003G343600 Sobic010G278600 Sobic010G278600 Sobic006G100000--Sobic010G278600 Sobic002G299100 Sobic002G299100 Sobic006G100000--Sobic002G299100 Sobic006G100000--Sobic004G197900 Sobic006G100000--Sobic008G152900 Sobic004G197900--Sobic008G117200 Sobic002G421700 Sobic002G421700 Sobic004G197900--Sobic002G421700 Sobic004G197900--Sobic008G152900 Sobic006G128800 Sobic006G128800 Sobic004G197900--Sobic006G128800 Sobic001G425000 Sobic001G425000 Sobic004G197900--Sobic001G425000 Sobic002G051450 Sobic002G051450 Sobic004G197900--Sobic002G051450 Sobic005G015100 Sobic005G015100 Sobic004G197900--Sobic005G015100 Sobic008G034600 Sobic008G034600 Sobic004G197900--Sobic008G034600 Sobic010G263800 Sobic010G263800 Sobic004G197900--Sobic010G263800 Sobic004G061900 Sobic004G061900 Sobic007G191100--Sobic004G061900 Sobic002G076400 Sobic002G076400 Sobic007G191100--Sobic002G076400 Sobic007G191100--Sobic008G034600 Sobic010G077600 Sobic010G077600 Sobic007G191100--Sobic010G077600 Sobic007G191100--Sobic010G263800 Sobic007G011400 Sobic007G011400 Sobic007G191100--Sobic007G011400 Sobic010G074500 Sobic010G074500 Sobic007G191100--Sobic010G074500 Sobic003G093600 Sobic003G093600 Sobic007G191100--Sobic003G093600 Sobic007G191100--Sobic008G117200 Sobic006G130200--Sobic006G128800 Sobic006G130200--Sobic004G218300 Sobic010G174800 Sobic010G174800 Sobic006G130200--Sobic010G174800 Sobic009G032300 Sobic009G032300 Sobic006G130200--Sobic009G032300 Sobic006G130200--Sobic003G398400 Sobic006G130200--Sobic001G425000 Sobic006G092800 Sobic006G092800 Sobic006G130200--Sobic006G092800 Sobic003G336800 Sobic003G336800 Sobic006G130200--Sobic003G336800 Sobic001G235000 Sobic001G235000 Sobic006G130200--Sobic001G235000 Sobic002G033600--Sobic010G237650 Sobic007G139400 Sobic007G139400 Sobic002G033600--Sobic007G139400 Sobic002G268900 Sobic002G268900 Sobic002G033600--Sobic002G268900 Sobic001G049600 Sobic001G049600 Sobic002G033600--Sobic001G049600 Sobic002G061400 Sobic002G061400 Sobic002G033600--Sobic002G061400 Sobic007G188900 Sobic007G188900 Sobic002G033600--Sobic007G188900 Sobic010G199800 Sobic010G199800 Sobic002G033600--Sobic010G199800 Sobic009G102000 Sobic009G102000 Sobic002G033600--Sobic009G102000 Sobic002G334600 Sobic002G334600 Sobic002G033600--Sobic002G334600
Octagon: transcription factors


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