Gene annotation
Transcriptome id Sobic.006G215100.1
Synonym Sb06g028530
Functional annotation expressed protein
UniProt C5YG14
Pfam -
Panther DB PTHR31218 PTHR31218:SF32
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G56080 : -
RAP-DB (Rice) LOC_Os04g52570.1 : expressed protein
MaizeGDB (Corn) Zm00025a057033 , Zm00025a009791
Brachypodium KQJ84605
Barley HORVU2Hr1G098580.8 , HORVU2Hr1G098580.9 , HORVU2Hr1G098580.4 , HORVU2Hr1G098580.5 , HORVU2Hr1G098580.6 , HORVU2Hr1G098580.1 , HORVU2Hr1G098580.18 , HORVU2Hr1G098580.19 , HORVU2Hr1G098580.16 , HORVU2Hr1G098580.17 , HORVU2Hr1G098580.14 , HORVU2Hr1G098580.15 , HORVU2Hr1G098580.12 , HORVU2Hr1G098580.13 , HORVU2Hr1G098580.10 , HORVU2Hr1G098580.11
Wheat TraesCS2B02G437900 , TraesCS2B02G437900 , TraesCS2D02G416200 , TraesCS2A02G419200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G073600 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@auxin response factor, putative, expressed -
2 Sobic.004G218300 Zinc finger, ZZ type domain containing protein, expressed -
3 Sobic.010G237650 - -
4 Sobic.006G048300 - -
5 Sobic.003G398400 expressed protein -
6 Sobic.006G130200 expressed protein -
7 Sobic.002G147100 esterase/lipase/thioesterase, putative, expressed -
8 Sobic.003G402900 HYS1, putative, expressed -
9 Sobic.010G074900 G protein coupled receptor, putative, expressed -
10 Sobic.004G242700 heat shock protein DnaJ, putative, expressed -
11 Sobic.003G229400 CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed -
12 Sobic.009G228400 lipase-related, putative, expressed -
13 Sobic.006G202200 ENTH domain containing protein, expressed K12471: epsin
14 Sobic.001G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@squalene synthetase, putative, expressed K00801: farnesyl-diphosphate farnesyltransferase
15 Sobic.006G144000 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.006G082900 expressed protein -
17 Sobic.010G035801 - -
18 Sobic.004G353400 leucine-rich repeat-containing protein 40, putative, expressed -
19 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
20 Sobic.004G197900 - -


Gene co-expression network
sample Sobic006G215100 Sobic006G215100 Sobic010G073600 Sobic010G073600 Sobic006G215100--Sobic010G073600 Sobic004G218300 Sobic004G218300 Sobic006G215100--Sobic004G218300 Sobic010G237650 Sobic010G237650 Sobic006G215100--Sobic010G237650 Sobic006G048300 Sobic006G048300 Sobic006G215100--Sobic006G048300 Sobic003G398400 Sobic003G398400 Sobic006G215100--Sobic003G398400 Sobic006G130200 Sobic006G130200 Sobic006G215100--Sobic006G130200 Sobic002G147100 Sobic002G147100 Sobic006G215100--Sobic002G147100 Sobic003G402900 Sobic003G402900 Sobic006G215100--Sobic003G402900 Sobic010G074900 Sobic010G074900 Sobic006G215100--Sobic010G074900 Sobic010G073600--Sobic006G215100 Sobic010G073600--Sobic010G237650 Sobic003G229400 Sobic003G229400 Sobic010G073600--Sobic003G229400 Sobic010G073600--Sobic006G130200 Sobic010G073600--Sobic004G218300 Sobic005G128000 Sobic005G128000 Sobic010G073600--Sobic005G128000 Sobic003G289100 Sobic003G289100 Sobic010G073600--Sobic003G289100 Sobic006G144000 Sobic006G144000 Sobic010G073600--Sobic006G144000 Sobic010G073600--Sobic003G402900 Sobic004G218300--Sobic003G398400 Sobic004G218300--Sobic006G130200 Sobic004G259300 Sobic004G259300 Sobic004G218300--Sobic004G259300 Sobic009G228400 Sobic009G228400 Sobic004G218300--Sobic009G228400 Sobic004G218300--Sobic006G215100 Sobic003G407100 Sobic003G407100 Sobic004G218300--Sobic003G407100 Sobic007G192400 Sobic007G192400 Sobic004G218300--Sobic007G192400 Sobic004G218300--Sobic002G147100 Sobic002G317400 Sobic002G317400 Sobic004G218300--Sobic002G317400 Sobic002G033600 Sobic002G033600 Sobic010G237650--Sobic002G033600 Sobic003G092066 Sobic003G092066 Sobic010G237650--Sobic003G092066 Sobic002G268900 Sobic002G268900 Sobic010G237650--Sobic002G268900 Sobic010G237650--Sobic006G144000 Sobic007G139400 Sobic007G139400 Sobic010G237650--Sobic007G139400 Sobic010G237650--Sobic006G215100 Sobic010G237650--Sobic010G073600 Sobic010G237650--Sobic005G128000 Sobic009G102000 Sobic009G102000 Sobic010G237650--Sobic009G102000 Sobic006G048300--Sobic006G215100 Sobic002G115500 Sobic002G115500 Sobic006G048300--Sobic002G115500 Sobic006G048300--Sobic010G237650 Sobic006G048300--Sobic010G074900 Sobic006G048300--Sobic003G092066 Sobic005G216800 Sobic005G216800 Sobic006G048300--Sobic005G216800 Sobic006G048300--Sobic007G139400 Sobic003G190300 Sobic003G190300 Sobic006G048300--Sobic003G190300 Sobic006G048300--Sobic005G128000 Sobic003G398400--Sobic004G218300 Sobic003G398400--Sobic006G130200 Sobic004G084500 Sobic004G084500 Sobic003G398400--Sobic004G084500 Sobic003G394200 Sobic003G394200 Sobic003G398400--Sobic003G394200 Sobic002G164300 Sobic002G164300 Sobic003G398400--Sobic002G164300 Sobic010G213500 Sobic010G213500 Sobic003G398400--Sobic010G213500 Sobic003G398400--Sobic010G074900 Sobic004G122900 Sobic004G122900 Sobic003G398400--Sobic004G122900 Sobic003G398400--Sobic003G407100 Sobic006G128800 Sobic006G128800 Sobic006G130200--Sobic006G128800 Sobic006G130200--Sobic004G218300 Sobic010G174800 Sobic010G174800 Sobic006G130200--Sobic010G174800 Sobic009G032300 Sobic009G032300 Sobic006G130200--Sobic009G032300 Sobic006G130200--Sobic003G398400 Sobic001G425000 Sobic001G425000 Sobic006G130200--Sobic001G425000 Sobic006G092800 Sobic006G092800 Sobic006G130200--Sobic006G092800 Sobic003G336800 Sobic003G336800 Sobic006G130200--Sobic003G336800 Sobic001G235000 Sobic001G235000 Sobic006G130200--Sobic001G235000 Sobic002G147200 Sobic002G147200 Sobic002G147100--Sobic002G147200 Sobic007G147400 Sobic007G147400 Sobic002G147100--Sobic007G147400 Sobic007G030100 Sobic007G030100 Sobic002G147100--Sobic007G030100 Sobic002G147100--Sobic009G228400 Sobic004G042900 Sobic004G042900 Sobic002G147100--Sobic004G042900 Sobic002G147100--Sobic009G102000 Sobic006G165800 Sobic006G165800 Sobic002G147100--Sobic006G165800 Sobic002G147100--Sobic003G398400 Sobic002G147100--Sobic002G317400 Sobic003G402900--Sobic007G030100 Sobic003G368400 Sobic003G368400 Sobic003G402900--Sobic003G368400 Sobic001G385000 Sobic001G385000 Sobic003G402900--Sobic001G385000 Sobic004G017900 Sobic004G017900 Sobic003G402900--Sobic004G017900 Sobic007G189100 Sobic007G189100 Sobic003G402900--Sobic007G189100 Sobic003G402900--Sobic002G147100 Sobic003G402900--Sobic006G215100 Sobic003G402900--Sobic002G147200 Sobic007G043700 Sobic007G043700 Sobic003G402900--Sobic007G043700 Sobic004G345700 Sobic004G345700 Sobic010G074900--Sobic004G345700 Sobic003G205501 Sobic003G205501 Sobic010G074900--Sobic003G205501 Sobic001G408700 Sobic001G408700 Sobic010G074900--Sobic001G408700 Sobic001G193100 Sobic001G193100 Sobic010G074900--Sobic001G193100 Sobic010G074900--Sobic004G084500 Sobic006G091000 Sobic006G091000 Sobic010G074900--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic010G074900--Sobic005G040900 Sobic004G007300 Sobic004G007300 Sobic010G074900--Sobic004G007300 Sobic010G074900--Sobic003G398400
Octagon: transcription factors


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