Gene annotation
Transcriptome id Sobic.010G073600.1
Synonym IAA25, ARF7, BIP, Sb10g006440, NPH4, auxin response factor, SbARF22, IAA21, IAA23, TIR5, MSG1
Functional annotation "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA and BR treatments" (PubMedID : 20499123)
auxin response factor, putative, expressed
UniProt A0A194YIW1
Pfam PF02309 PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0009725response to hormone


Orthologs (automatic annotation)
TAIR AT5G20730 : Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
RAP-DB (Rice) LOC_Os06g09660.1 : auxin response factor, putative, expressed
MaizeGDB (Corn) Zm00025a018041 , Zm00025a049674
Brachypodium KQK19142 , KQK19143 , PNT76274 , PNT76275 , PNT76270 , PNT76271 , PNT76272 , PNT76273 , PNT76269 , PNT76268
Barley HORVU7Hr1G033820.32 , HORVU7Hr1G033820.31 , HORVU7Hr1G033820.30 , HORVU7Hr1G033820.17 , HORVU7Hr1G033820.16 , HORVU7Hr1G033820.12 , HORVU7Hr1G033820.10 , HORVU7Hr1G033820.28 , HORVU7Hr1G033820.20 , HORVU7Hr1G033820.21 , HORVU7Hr1G033820.22 , HORVU7Hr1G033820.23 , HORVU7Hr1G033820.24 , HORVU7Hr1G033820.26 , HORVU7Hr1G033820.27 , HORVU7Hr1G033820.8 , HORVU7Hr1G033820.1 , HORVU7Hr1G033820.3 , HORVU7Hr1G033820.2 , HORVU7Hr1G033820.5 , HORVU7Hr1G033820.4 , HORVU7Hr1G033820.7 , HORVU7Hr1G033820.6 , HORVU7Hr1G033820.29 , HORVU7Hr1G033820.25 , HORVU7Hr1G033820.19 , HORVU7Hr1G033820.18 , HORVU7Hr1G033820.15 , HORVU7Hr1G033820.14 , HORVU7Hr1G033820.11 , HORVU7Hr1G033820.13
Wheat TraesCS7B02G065800 , TraesCS7B02G065800 , TraesCS7D02G161900 , TraesCS7D02G161900 , TraesCS7D02G161900 , TraesCS7A02G160800 , TraesCS7A02G160800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G215100 expressed protein -
2 Sobic.010G237650 - -
3 Sobic.003G229400 CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed -
4 Sobic.006G130200 expressed protein -
5 Sobic.004G218300 Zinc finger, ZZ type domain containing protein, expressed -
6 Sobic.005G128000 stripe rust resistance protein Yr10, putative, expressed -
7 Sobic.003G289100 3-5 exonuclease domain-containing protein, putative, expressed -
8 Sobic.006G144000 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.003G402900 HYS1, putative, expressed -
10 Sobic.003G128600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNAJ heat shock N-terminal domain-containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
11 Sobic.003G092066 - -
12 Sobic.002G076400 structural constituent of ribosome, putative, expressed -
13 Sobic.003G336800 expressed protein -
14 Sobic.001G116100 threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed K01754: E4.3.1.19, ilvA, threonine dehydratase
15 Sobic.003G015000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
16 Sobic.001G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@squalene synthetase, putative, expressed K00801: farnesyl-diphosphate farnesyltransferase
17 Sobic.009G228400 lipase-related, putative, expressed -
18 Sobic.002G147100 esterase/lipase/thioesterase, putative, expressed -
19 Sobic.002G033600 Leucine Rich Repeat family protein, expressed -
20 Sobic.007G188900 AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic010G073600 Sobic010G073600 Sobic006G215100 Sobic006G215100 Sobic010G073600--Sobic006G215100 Sobic010G237650 Sobic010G237650 Sobic010G073600--Sobic010G237650 Sobic003G229400 Sobic003G229400 Sobic010G073600--Sobic003G229400 Sobic006G130200 Sobic006G130200 Sobic010G073600--Sobic006G130200 Sobic004G218300 Sobic004G218300 Sobic010G073600--Sobic004G218300 Sobic005G128000 Sobic005G128000 Sobic010G073600--Sobic005G128000 Sobic003G289100 Sobic003G289100 Sobic010G073600--Sobic003G289100 Sobic006G144000 Sobic006G144000 Sobic010G073600--Sobic006G144000 Sobic003G402900 Sobic003G402900 Sobic010G073600--Sobic003G402900 Sobic006G215100--Sobic010G073600 Sobic006G215100--Sobic004G218300 Sobic006G215100--Sobic010G237650 Sobic006G048300 Sobic006G048300 Sobic006G215100--Sobic006G048300 Sobic003G398400 Sobic003G398400 Sobic006G215100--Sobic003G398400 Sobic006G215100--Sobic006G130200 Sobic002G147100 Sobic002G147100 Sobic006G215100--Sobic002G147100 Sobic006G215100--Sobic003G402900 Sobic010G074900 Sobic010G074900 Sobic006G215100--Sobic010G074900 Sobic002G033600 Sobic002G033600 Sobic010G237650--Sobic002G033600 Sobic003G092066 Sobic003G092066 Sobic010G237650--Sobic003G092066 Sobic002G268900 Sobic002G268900 Sobic010G237650--Sobic002G268900 Sobic010G237650--Sobic006G144000 Sobic007G139400 Sobic007G139400 Sobic010G237650--Sobic007G139400 Sobic010G237650--Sobic006G215100 Sobic010G237650--Sobic010G073600 Sobic010G237650--Sobic005G128000 Sobic009G102000 Sobic009G102000 Sobic010G237650--Sobic009G102000 Sobic003G229400--Sobic010G073600 Sobic003G128600 Sobic003G128600 Sobic003G229400--Sobic003G128600 Sobic003G229400--Sobic006G215100 Sobic010G035801 Sobic010G035801 Sobic003G229400--Sobic010G035801 Sobic006G100000 Sobic006G100000 Sobic003G229400--Sobic006G100000 Sobic004G197900 Sobic004G197900 Sobic003G229400--Sobic004G197900 Sobic007G191100 Sobic007G191100 Sobic003G229400--Sobic007G191100 Sobic003G229400--Sobic006G130200 Sobic003G229400--Sobic002G033600 Sobic006G128800 Sobic006G128800 Sobic006G130200--Sobic006G128800 Sobic006G130200--Sobic004G218300 Sobic010G174800 Sobic010G174800 Sobic006G130200--Sobic010G174800 Sobic009G032300 Sobic009G032300 Sobic006G130200--Sobic009G032300 Sobic006G130200--Sobic003G398400 Sobic001G425000 Sobic001G425000 Sobic006G130200--Sobic001G425000 Sobic006G092800 Sobic006G092800 Sobic006G130200--Sobic006G092800 Sobic003G336800 Sobic003G336800 Sobic006G130200--Sobic003G336800 Sobic001G235000 Sobic001G235000 Sobic006G130200--Sobic001G235000 Sobic004G218300--Sobic003G398400 Sobic004G218300--Sobic006G130200 Sobic004G259300 Sobic004G259300 Sobic004G218300--Sobic004G259300 Sobic009G228400 Sobic009G228400 Sobic004G218300--Sobic009G228400 Sobic004G218300--Sobic006G215100 Sobic003G407100 Sobic003G407100 Sobic004G218300--Sobic003G407100 Sobic007G192400 Sobic007G192400 Sobic004G218300--Sobic007G192400 Sobic004G218300--Sobic002G147100 Sobic002G317400 Sobic002G317400 Sobic004G218300--Sobic002G317400 Sobic002G073300 Sobic002G073300 Sobic005G128000--Sobic002G073300 Sobic004G045566 Sobic004G045566 Sobic005G128000--Sobic004G045566 Sobic001G261537 Sobic001G261537 Sobic005G128000--Sobic001G261537 Sobic005G099150 Sobic005G099150 Sobic005G128000--Sobic005G099150 Sobic006G067100 Sobic006G067100 Sobic005G128000--Sobic006G067100 Sobic002G182300 Sobic002G182300 Sobic005G128000--Sobic002G182300 Sobic005G128000--Sobic010G237650 Sobic010G139301 Sobic010G139301 Sobic005G128000--Sobic010G139301 Sobic008G106600 Sobic008G106600 Sobic005G128000--Sobic008G106600 Sobic003G091600 Sobic003G091600 Sobic003G289100--Sobic003G091600 Sobic007G184800 Sobic007G184800 Sobic003G289100--Sobic007G184800 Sobic003G213000 Sobic003G213000 Sobic003G289100--Sobic003G213000 Sobic003G289100--Sobic010G073600 Sobic003G289100--Sobic004G218300 Sobic003G289100--Sobic004G259300 Sobic001G519600 Sobic001G519600 Sobic003G289100--Sobic001G519600 Sobic003G289100--Sobic007G192400 Sobic008G155500 Sobic008G155500 Sobic003G289100--Sobic008G155500 Sobic001G017200 Sobic001G017200 Sobic006G144000--Sobic001G017200 Sobic009G017200 Sobic009G017200 Sobic006G144000--Sobic009G017200 Sobic009G059400 Sobic009G059400 Sobic006G144000--Sobic009G059400 Sobic006G144000--Sobic010G237650 Sobic004G180900 Sobic004G180900 Sobic006G144000--Sobic004G180900 Sobic004G116600 Sobic004G116600 Sobic006G144000--Sobic004G116600 Sobic006G144000--Sobic006G130200 Sobic004G313300 Sobic004G313300 Sobic006G144000--Sobic004G313300 Sobic006G144000--Sobic001G425000 Sobic007G030100 Sobic007G030100 Sobic003G402900--Sobic007G030100 Sobic003G368400 Sobic003G368400 Sobic003G402900--Sobic003G368400 Sobic001G385000 Sobic001G385000 Sobic003G402900--Sobic001G385000 Sobic004G017900 Sobic004G017900 Sobic003G402900--Sobic004G017900 Sobic007G189100 Sobic007G189100 Sobic003G402900--Sobic007G189100 Sobic003G402900--Sobic002G147100 Sobic003G402900--Sobic006G215100 Sobic002G147200 Sobic002G147200 Sobic003G402900--Sobic002G147200 Sobic007G043700 Sobic007G043700 Sobic003G402900--Sobic007G043700
Octagon: transcription factors


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