Gene annotation
Transcriptome id Sobic.001G116100.1
Synonym OMR1, Sb01g010250
Functional annotation threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed
UniProt C5WN25
Pfam PF00585 PF00291
Panther DB PTHR10314 PTHR10314:SF30
NCBI CDD KOG1250; Threonine/serine dehydratases
KEGG Orthology K01754; E4.3.1.19, ilvA, threonine dehydratase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G10050 : L-O-methylthreonine resistant 1
RAP-DB (Rice) LOC_Os03g50510.1 : threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a016967 , Zm00025a007870
Brachypodium KQK13631 , PNT74260 , KQJ99825
Barley HORVU4Hr1G007890.8 , HORVU4Hr1G007890.9 , HORVU4Hr1G007890.1 , HORVU4Hr1G007890.2 , HORVU4Hr1G007890.3 , HORVU4Hr1G007890.4 , HORVU4Hr1G007890.5 , HORVU4Hr1G007890.6 , HORVU4Hr1G007890.7 , HORVU4Hr1G007890.10 , HORVU4Hr1G007890.11
Wheat TraesCS5A02G021800 , TraesCS5A02G021600 , TraesCS4B02G047600 , TraesCS5D02G027400 , TraesCS4A02G266700 , TraesCS4D02G047500 , TraesCS4D02G047500
Populus -


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cDNA sequences
Sobic.001G116100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G218200 expressed protein -
2 Sobic.002G095700 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
3 Sobic.003G354100 expressed protein -
4 Sobic.007G188900 AP2 domain containing protein, expressed -
5 Sobic.002G177400 expressed protein -
6 Sobic.002G362300 prefoldin, putative, expressed -
7 Sobic.001G346700 Ser/Thr protein phosphatase family protein, putative, expressed -
8 Sobic.008G073000 expressed protein -
9 Sobic.004G347100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
10 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -
11 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
12 Sobic.001G384600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
13 Sobic.008G099500 - -
14 Sobic.009G044900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
15 Sobic.001G202266 - -
16 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
17 Sobic.008G101800 expressed protein -
18 Sobic.005G030300 protein kinase PKN/PRK1, effector, putative, expressed -
19 Sobic.010G211300 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
20 Sobic.007G130300 ES43 protein, putative, expressed -


Gene co-expression network
sample Sobic001G116100 Sobic001G116100 Sobic001G218200 Sobic001G218200 Sobic001G116100--Sobic001G218200 Sobic002G095700 Sobic002G095700 Sobic001G116100--Sobic002G095700 Sobic003G354100 Sobic003G354100 Sobic001G116100--Sobic003G354100 Sobic007G188900 Sobic007G188900 Sobic001G116100--Sobic007G188900 Sobic002G177400 Sobic002G177400 Sobic001G116100--Sobic002G177400 Sobic002G362300 Sobic002G362300 Sobic001G116100--Sobic002G362300 Sobic001G346700 Sobic001G346700 Sobic001G116100--Sobic001G346700 Sobic008G073000 Sobic008G073000 Sobic001G116100--Sobic008G073000 Sobic004G347100 Sobic004G347100 Sobic001G116100--Sobic004G347100 Sobic001G218200--Sobic001G116100 Sobic006G261100 Sobic006G261100 Sobic001G218200--Sobic006G261100 Sobic005G180800 Sobic005G180800 Sobic001G218200--Sobic005G180800 Sobic001G218200--Sobic002G362300 Sobic002G103700 Sobic002G103700 Sobic001G218200--Sobic002G103700 Sobic004G256200 Sobic004G256200 Sobic001G218200--Sobic004G256200 Sobic005G030300 Sobic005G030300 Sobic001G218200--Sobic005G030300 Sobic002G347700 Sobic002G347700 Sobic001G218200--Sobic002G347700 Sobic007G155900 Sobic007G155900 Sobic001G218200--Sobic007G155900 Sobic006G278200 Sobic006G278200 Sobic002G095700--Sobic006G278200 Sobic002G095700--Sobic008G073000 Sobic002G095700--Sobic005G030300 Sobic008G165100 Sobic008G165100 Sobic002G095700--Sobic008G165100 Sobic002G067800 Sobic002G067800 Sobic002G095700--Sobic002G067800 Sobic003G433500 Sobic003G433500 Sobic002G095700--Sobic003G433500 Sobic002G089900 Sobic002G089900 Sobic002G095700--Sobic002G089900 Sobic009G022100 Sobic009G022100 Sobic002G095700--Sobic009G022100 Sobic004G078100 Sobic004G078100 Sobic002G095700--Sobic004G078100 Sobic003G354100--Sobic003G433500 Sobic004G013600 Sobic004G013600 Sobic003G354100--Sobic004G013600 Sobic003G132700 Sobic003G132700 Sobic003G354100--Sobic003G132700 Sobic007G117100 Sobic007G117100 Sobic003G354100--Sobic007G117100 Sobic003G354100--Sobic007G188900 Sobic007G139400 Sobic007G139400 Sobic003G354100--Sobic007G139400 Sobic006G092800 Sobic006G092800 Sobic003G354100--Sobic006G092800 Sobic006G248500 Sobic006G248500 Sobic003G354100--Sobic006G248500 Sobic009G129600 Sobic009G129600 Sobic003G354100--Sobic009G129600 Sobic002G061400 Sobic002G061400 Sobic007G188900--Sobic002G061400 Sobic008G129700 Sobic008G129700 Sobic007G188900--Sobic008G129700 Sobic007G188900--Sobic007G139400 Sobic007G088900 Sobic007G088900 Sobic007G188900--Sobic007G088900 Sobic007G188900--Sobic002G177400 Sobic002G334600 Sobic002G334600 Sobic007G188900--Sobic002G334600 Sobic007G188900--Sobic003G354100 Sobic007G188900--Sobic009G129600 Sobic007G188900--Sobic003G433500 Sobic004G088400 Sobic004G088400 Sobic002G177400--Sobic004G088400 Sobic009G030300 Sobic009G030300 Sobic002G177400--Sobic009G030300 Sobic008G117200 Sobic008G117200 Sobic002G177400--Sobic008G117200 Sobic007G008800 Sobic007G008800 Sobic002G177400--Sobic007G008800 Sobic002G177400--Sobic008G129700 Sobic007G116400 Sobic007G116400 Sobic002G177400--Sobic007G116400 Sobic003G346000 Sobic003G346000 Sobic002G177400--Sobic003G346000 Sobic004G061900 Sobic004G061900 Sobic002G177400--Sobic004G061900 Sobic008G068800 Sobic008G068800 Sobic002G177400--Sobic008G068800 Sobic005G009200 Sobic005G009200 Sobic002G362300--Sobic005G009200 Sobic001G371000 Sobic001G371000 Sobic002G362300--Sobic001G371000 Sobic002G362300--Sobic003G433500 Sobic005G229000 Sobic005G229000 Sobic002G362300--Sobic005G229000 Sobic002G362300--Sobic008G073000 Sobic002G362300--Sobic009G030300 Sobic002G362300--Sobic002G095700 Sobic002G362300--Sobic005G030300 Sobic009G044900 Sobic009G044900 Sobic002G362300--Sobic009G044900 Sobic001G346700--Sobic009G129600 Sobic001G346700--Sobic004G347100 Sobic003G415100 Sobic003G415100 Sobic001G346700--Sobic003G415100 Sobic001G346700--Sobic003G354100 Sobic001G346700--Sobic007G188900 Sobic002G148400 Sobic002G148400 Sobic001G346700--Sobic002G148400 Sobic001G346700--Sobic007G139400 Sobic002G268900 Sobic002G268900 Sobic001G346700--Sobic002G268900 Sobic001G346700--Sobic002G334600 Sobic008G073000--Sobic005G030300 Sobic002G045400 Sobic002G045400 Sobic008G073000--Sobic002G045400 Sobic008G073000--Sobic002G095700 Sobic008G101800 Sobic008G101800 Sobic008G073000--Sobic008G101800 Sobic001G202266 Sobic001G202266 Sobic008G073000--Sobic001G202266 Sobic008G073000--Sobic006G278200 Sobic008G073000--Sobic008G165100 Sobic010G174800 Sobic010G174800 Sobic008G073000--Sobic010G174800 Sobic008G073000--Sobic002G067800 Sobic004G347100--Sobic007G139400 Sobic004G347100--Sobic006G248500 Sobic006G091000 Sobic006G091000 Sobic004G347100--Sobic006G091000 Sobic004G347100--Sobic009G044900 Sobic005G040900 Sobic005G040900 Sobic004G347100--Sobic005G040900 Sobic004G347100--Sobic009G129600 Sobic009G151200 Sobic009G151200 Sobic004G347100--Sobic009G151200 Sobic009G040800 Sobic009G040800 Sobic004G347100--Sobic009G040800 Sobic003G336800 Sobic003G336800 Sobic004G347100--Sobic003G336800
Octagon: transcription factors


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