Gene annotation
Transcriptome id Sobic.004G347100.1
Synonym Sb04g037380
Functional annotation DHHC zinc finger domain containing protein, expressed
UniProt C5XVY1
Pfam PF01529
Panther DB PTHR22883 PTHR22883:SF19
NCBI CDD KOG1315; Predicted DHHC-type Zn-finger protein
KEGG Orthology K18932; palmitoyltransferase
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G04270 : DHHC-type zinc finger family protein
RAP-DB (Rice) LOC_Os02g57370.1 : DHHC zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022618
Brachypodium KQK01382
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G347100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G139400 OsFBL33 - F-box domain and LRR containing protein, expressed -
2 Sobic.006G248500 expressed protein -
3 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
4 Sobic.009G044900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
5 Sobic.005G040900 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
6 Sobic.009G129600 ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed -
7 Sobic.009G151200 expressed protein -
8 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
9 Sobic.003G336800 expressed protein -
10 Sobic.001G346700 Ser/Thr protein phosphatase family protein, putative, expressed -
11 Sobic.003G253400 expressed protein -
12 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
13 Sobic.002G268900 flap endonuclease, putative, expressed K15338: GEN1, flap endonuclease GEN
14 Sobic.009G022100 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
15 Sobic.003G354100 expressed protein -
16 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
17 Sobic.009G000400 expressed protein -
18 Sobic.008G058800 OsFBX369 - F-box domain containing protein, expressed -
19 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
20 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16


Gene co-expression network
sample Sobic004G347100 Sobic004G347100 Sobic007G139400 Sobic007G139400 Sobic004G347100--Sobic007G139400 Sobic006G248500 Sobic006G248500 Sobic004G347100--Sobic006G248500 Sobic006G091000 Sobic006G091000 Sobic004G347100--Sobic006G091000 Sobic009G044900 Sobic009G044900 Sobic004G347100--Sobic009G044900 Sobic005G040900 Sobic005G040900 Sobic004G347100--Sobic005G040900 Sobic009G129600 Sobic009G129600 Sobic004G347100--Sobic009G129600 Sobic009G151200 Sobic009G151200 Sobic004G347100--Sobic009G151200 Sobic009G040800 Sobic009G040800 Sobic004G347100--Sobic009G040800 Sobic003G336800 Sobic003G336800 Sobic004G347100--Sobic003G336800 Sobic007G139400--Sobic004G347100 Sobic002G033600 Sobic002G033600 Sobic007G139400--Sobic002G033600 Sobic007G188900 Sobic007G188900 Sobic007G139400--Sobic007G188900 Sobic007G139400--Sobic009G040800 Sobic007G088900 Sobic007G088900 Sobic007G139400--Sobic007G088900 Sobic007G139400--Sobic005G040900 Sobic002G334600 Sobic002G334600 Sobic007G139400--Sobic002G334600 Sobic007G139400--Sobic009G129600 Sobic003G354100 Sobic003G354100 Sobic007G139400--Sobic003G354100 Sobic001G469800 Sobic001G469800 Sobic006G248500--Sobic001G469800 Sobic002G259800 Sobic002G259800 Sobic006G248500--Sobic002G259800 Sobic003G433500 Sobic003G433500 Sobic006G248500--Sobic003G433500 Sobic006G248500--Sobic009G151200 Sobic008G058800 Sobic008G058800 Sobic006G248500--Sobic008G058800 Sobic004G013600 Sobic004G013600 Sobic006G248500--Sobic004G013600 Sobic007G026000 Sobic007G026000 Sobic006G248500--Sobic007G026000 Sobic006G248500--Sobic004G347100 Sobic006G248500--Sobic009G044900 Sobic006G091000--Sobic009G040800 Sobic005G178950 Sobic005G178950 Sobic006G091000--Sobic005G178950 Sobic004G353400 Sobic004G353400 Sobic006G091000--Sobic004G353400 Sobic006G091000--Sobic005G040900 Sobic006G091000--Sobic004G347100 Sobic010G074900 Sobic010G074900 Sobic006G091000--Sobic010G074900 Sobic006G091000--Sobic007G139400 Sobic010G172400 Sobic010G172400 Sobic006G091000--Sobic010G172400 Sobic005G114400 Sobic005G114400 Sobic006G091000--Sobic005G114400 Sobic009G030300 Sobic009G030300 Sobic009G044900--Sobic009G030300 Sobic002G089900 Sobic002G089900 Sobic009G044900--Sobic002G089900 Sobic009G044900--Sobic006G248500 Sobic009G044900--Sobic003G433500 Sobic002G177400 Sobic002G177400 Sobic009G044900--Sobic002G177400 Sobic009G044900--Sobic004G347100 Sobic009G044900--Sobic001G469800 Sobic002G362300 Sobic002G362300 Sobic009G044900--Sobic002G362300 Sobic009G044900--Sobic004G013600 Sobic005G040900--Sobic009G040800 Sobic005G040900--Sobic006G091000 Sobic005G040900--Sobic004G347100 Sobic005G040900--Sobic007G139400 Sobic005G040900--Sobic010G074900 Sobic003G205501 Sobic003G205501 Sobic005G040900--Sobic003G205501 Sobic004G345400 Sobic004G345400 Sobic005G040900--Sobic004G345400 Sobic001G472100 Sobic001G472100 Sobic005G040900--Sobic001G472100 Sobic005G040900--Sobic009G129600 Sobic009G129600--Sobic008G058800 Sobic010G077500 Sobic010G077500 Sobic009G129600--Sobic010G077500 Sobic001G346700 Sobic001G346700 Sobic009G129600--Sobic001G346700 Sobic009G129600--Sobic006G248500 Sobic009G129600--Sobic009G040800 Sobic002G063900 Sobic002G063900 Sobic009G129600--Sobic002G063900 Sobic008G100100 Sobic008G100100 Sobic009G129600--Sobic008G100100 Sobic002G357100 Sobic002G357100 Sobic009G129600--Sobic002G357100 Sobic002G148400 Sobic002G148400 Sobic009G129600--Sobic002G148400 Sobic009G151200--Sobic006G248500 Sobic009G151200--Sobic002G259800 Sobic005G133500 Sobic005G133500 Sobic009G151200--Sobic005G133500 Sobic004G285000 Sobic004G285000 Sobic009G151200--Sobic004G285000 Sobic001G424600 Sobic001G424600 Sobic009G151200--Sobic001G424600 Sobic004G085300 Sobic004G085300 Sobic009G151200--Sobic004G085300 Sobic009G151200--Sobic008G100100 Sobic004G086200 Sobic004G086200 Sobic009G151200--Sobic004G086200 Sobic004G156500 Sobic004G156500 Sobic009G151200--Sobic004G156500 Sobic010G278600 Sobic010G278600 Sobic009G040800--Sobic010G278600 Sobic009G040800--Sobic006G091000 Sobic009G040800--Sobic005G040900 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic004G246100 Sobic004G246100 Sobic009G040800--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic009G040800--Sobic001G042200 Sobic009G040800--Sobic004G353400 Sobic004G088400 Sobic004G088400 Sobic003G336800--Sobic004G088400 Sobic008G129700 Sobic008G129700 Sobic003G336800--Sobic008G129700 Sobic002G061400 Sobic002G061400 Sobic003G336800--Sobic002G061400 Sobic010G174800 Sobic010G174800 Sobic003G336800--Sobic010G174800 Sobic001G296500 Sobic001G296500 Sobic003G336800--Sobic001G296500 Sobic010G202600 Sobic010G202600 Sobic003G336800--Sobic010G202600 Sobic010G199800 Sobic010G199800 Sobic003G336800--Sobic010G199800 Sobic006G128800 Sobic006G128800 Sobic003G336800--Sobic006G128800 Sobic007G008800 Sobic007G008800 Sobic003G336800--Sobic007G008800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.