Gene annotation
Transcriptome id Sobic.005G040900.1
Synonym Sb05g003390
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Y508
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF25
NCBI CDD KOG0802; E3 ubiquitin ligase
KEGG Orthology K10601; SYVN1, E3 ubiquitin-protein ligase synoviolin
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G65040 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g19680.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a031425 , Zm00025a028598 , Zm00025a033503 , Zm00025a012995
Brachypodium KQK03741 , KQK03740 , KQK18516 , KQK18515 , PNT70311
Barley HORVU7Hr1G045350.4 , HORVU7Hr1G045350.8 , HORVU7Hr1G045350.9 , HORVU7Hr1G045350.6 , HORVU7Hr1G045350.7 , HORVU7Hr1G045350.5 , HORVU7Hr1G045350.2 , HORVU7Hr1G045350.3
Wheat TraesCS7A02G220000 , TraesCS7D02G222100 , TraesCS3A02G179300 , TraesCS3D02G184200 , TraesCS3D02G184200 , TraesCS3D02G184200 , TraesCS3D02G184200 , TraesCS7B02G127400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G040900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
2 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
3 Sobic.004G347100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
4 Sobic.007G139400 OsFBL33 - F-box domain and LRR containing protein, expressed -
5 Sobic.010G074900 G protein coupled receptor, putative, expressed -
6 Sobic.003G205501 - -
7 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
8 Sobic.001G472100 frigida, putative, expressed -
9 Sobic.009G129600 ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed -
10 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
11 Sobic.003G253400 expressed protein -
12 Sobic.008G058800 OsFBX369 - F-box domain containing protein, expressed -
13 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
14 Sobic.009G000400 expressed protein -
15 Sobic.002G115500 PHD finger protein, putative, expressed -
16 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
17 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -
18 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
19 Sobic.009G125000 cyclin-dependent kinase C-1, putative, expressed K08819: cyclin-dependent kinase 12/13
20 Sobic.006G267300 expressed protein -


Gene co-expression network
sample Sobic005G040900 Sobic005G040900 Sobic009G040800 Sobic009G040800 Sobic005G040900--Sobic009G040800 Sobic006G091000 Sobic006G091000 Sobic005G040900--Sobic006G091000 Sobic004G347100 Sobic004G347100 Sobic005G040900--Sobic004G347100 Sobic007G139400 Sobic007G139400 Sobic005G040900--Sobic007G139400 Sobic010G074900 Sobic010G074900 Sobic005G040900--Sobic010G074900 Sobic003G205501 Sobic003G205501 Sobic005G040900--Sobic003G205501 Sobic004G345400 Sobic004G345400 Sobic005G040900--Sobic004G345400 Sobic001G472100 Sobic001G472100 Sobic005G040900--Sobic001G472100 Sobic009G129600 Sobic009G129600 Sobic005G040900--Sobic009G129600 Sobic010G278600 Sobic010G278600 Sobic009G040800--Sobic010G278600 Sobic009G040800--Sobic006G091000 Sobic009G040800--Sobic005G040900 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic004G246100 Sobic004G246100 Sobic009G040800--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic009G040800--Sobic001G042200 Sobic004G353400 Sobic004G353400 Sobic009G040800--Sobic004G353400 Sobic006G091000--Sobic009G040800 Sobic005G178950 Sobic005G178950 Sobic006G091000--Sobic005G178950 Sobic006G091000--Sobic004G353400 Sobic006G091000--Sobic005G040900 Sobic006G091000--Sobic004G347100 Sobic006G091000--Sobic010G074900 Sobic006G091000--Sobic007G139400 Sobic010G172400 Sobic010G172400 Sobic006G091000--Sobic010G172400 Sobic005G114400 Sobic005G114400 Sobic006G091000--Sobic005G114400 Sobic004G347100--Sobic007G139400 Sobic006G248500 Sobic006G248500 Sobic004G347100--Sobic006G248500 Sobic004G347100--Sobic006G091000 Sobic009G044900 Sobic009G044900 Sobic004G347100--Sobic009G044900 Sobic004G347100--Sobic005G040900 Sobic004G347100--Sobic009G129600 Sobic009G151200 Sobic009G151200 Sobic004G347100--Sobic009G151200 Sobic004G347100--Sobic009G040800 Sobic003G336800 Sobic003G336800 Sobic004G347100--Sobic003G336800 Sobic007G139400--Sobic004G347100 Sobic002G033600 Sobic002G033600 Sobic007G139400--Sobic002G033600 Sobic007G188900 Sobic007G188900 Sobic007G139400--Sobic007G188900 Sobic007G139400--Sobic009G040800 Sobic007G088900 Sobic007G088900 Sobic007G139400--Sobic007G088900 Sobic007G139400--Sobic005G040900 Sobic002G334600 Sobic002G334600 Sobic007G139400--Sobic002G334600 Sobic007G139400--Sobic009G129600 Sobic003G354100 Sobic003G354100 Sobic007G139400--Sobic003G354100 Sobic004G345700 Sobic004G345700 Sobic010G074900--Sobic004G345700 Sobic010G074900--Sobic003G205501 Sobic001G408700 Sobic001G408700 Sobic010G074900--Sobic001G408700 Sobic001G193100 Sobic001G193100 Sobic010G074900--Sobic001G193100 Sobic004G084500 Sobic004G084500 Sobic010G074900--Sobic004G084500 Sobic010G074900--Sobic006G091000 Sobic010G074900--Sobic005G040900 Sobic004G007300 Sobic004G007300 Sobic010G074900--Sobic004G007300 Sobic003G398400 Sobic003G398400 Sobic010G074900--Sobic003G398400 Sobic003G205501--Sobic001G408700 Sobic006G128800 Sobic006G128800 Sobic003G205501--Sobic006G128800 Sobic003G205501--Sobic004G345700 Sobic006G267300 Sobic006G267300 Sobic003G205501--Sobic006G267300 Sobic010G202600 Sobic010G202600 Sobic003G205501--Sobic010G202600 Sobic010G245000 Sobic010G245000 Sobic003G205501--Sobic010G245000 Sobic008G127400 Sobic008G127400 Sobic003G205501--Sobic008G127400 Sobic008G058800 Sobic008G058800 Sobic003G205501--Sobic008G058800 Sobic003G248500 Sobic003G248500 Sobic003G205501--Sobic003G248500 Sobic004G345400--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic004G345400--Sobic010G077500 Sobic009G249700 Sobic009G249700 Sobic004G345400--Sobic009G249700 Sobic007G042900 Sobic007G042900 Sobic004G345400--Sobic007G042900 Sobic004G180900 Sobic004G180900 Sobic004G345400--Sobic004G180900 Sobic006G186400 Sobic006G186400 Sobic004G345400--Sobic006G186400 Sobic004G345400--Sobic004G084500 Sobic007G056500 Sobic007G056500 Sobic004G345400--Sobic007G056500 Sobic003G394200 Sobic003G394200 Sobic004G345400--Sobic003G394200 Sobic001G472100--Sobic005G040900 Sobic009G059400 Sobic009G059400 Sobic001G472100--Sobic009G059400 Sobic005G198200 Sobic005G198200 Sobic001G472100--Sobic005G198200 Sobic009G125000 Sobic009G125000 Sobic001G472100--Sobic009G125000 Sobic001G472100--Sobic008G058800 Sobic001G472100--Sobic004G345400 Sobic001G472100--Sobic009G129600 Sobic001G472100--Sobic007G139400 Sobic001G472100--Sobic003G354100 Sobic009G129600--Sobic008G058800 Sobic009G129600--Sobic010G077500 Sobic001G346700 Sobic001G346700 Sobic009G129600--Sobic001G346700 Sobic009G129600--Sobic006G248500 Sobic009G129600--Sobic009G040800 Sobic002G063900 Sobic002G063900 Sobic009G129600--Sobic002G063900 Sobic008G100100 Sobic008G100100 Sobic009G129600--Sobic008G100100 Sobic002G357100 Sobic002G357100 Sobic009G129600--Sobic002G357100 Sobic002G148400 Sobic002G148400 Sobic009G129600--Sobic002G148400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.