Gene annotation
Transcriptome id Sobic.004G345400.1
Synonym Sb04g037240, ARPC1B, ARPC1
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A194YU89 , C6JRW5
Pfam PF00400
Panther DB PTHR10709
NCBI CDD KOG1523; Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC
KEGG Orthology K05757; actin related protein 2/3 complex, subunit 1A/1B
Gene Ontology GO:0005515; protein binding GO:0015629actin cytoskeleton GO:0005885Arp2/3 protein complex


Orthologs (automatic annotation)
TAIR AT2G31300 : actin-related protein C1B
RAP-DB (Rice) LOC_Os02g57220.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032803 , Zm00025a022608
Brachypodium KQK01361
Barley HORVU0Hr1G017620.18 , HORVU0Hr1G017620.19 , HORVU0Hr1G017620.14 , HORVU0Hr1G017620.15 , HORVU0Hr1G017620.16 , HORVU0Hr1G017620.17 , HORVU0Hr1G017620.10 , HORVU0Hr1G017620.11 , HORVU0Hr1G017620.12 , HORVU0Hr1G017620.13 , HORVU0Hr1G017620.21 , HORVU0Hr1G017620.20 , HORVU0Hr1G017620.6 , HORVU0Hr1G017620.7 , HORVU0Hr1G017620.4 , HORVU0Hr1G017620.5 , HORVU0Hr1G017620.2 , HORVU0Hr1G017620.3 , HORVU0Hr1G017620.1 , HORVU0Hr1G017620.8 , HORVU0Hr1G017620.9
Wheat TraesCSU02G081300 , TraesCS6B02G432000 , TraesCS6B02G432000 , TraesCS6B02G432000 , TraesCS6B02G432000 , TraesCSU02G160800 , TraesCSU02G160800 , TraesCS6D02G377800 , TraesCS6D02G377800 , TraesCS6B02G432000
Populus -


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cDNA sequences
Sobic.004G345400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
2 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
3 Sobic.009G249700 expressed protein -
4 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
5 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
6 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
7 Sobic.004G084500 GPI-anchor transamidase precursor, putative, expressed K05290: GPI-anchor transamidase subunit K
8 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
9 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
10 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
11 Sobic.006G244300 expressed protein -
12 Sobic.001G308400 expressed protein -
13 Sobic.002G063900 zinc ion binding protein, putative, expressed -
14 Sobic.006G049100 expressed protein -
15 Sobic.006G128100 lipase, putative, expressed -
16 Sobic.009G059400 expressed protein -
17 Sobic.008G058800 OsFBX369 - F-box domain containing protein, expressed -
18 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
19 Sobic.005G040900 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
20 Sobic.010G185400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A


Gene co-expression network
sample Sobic004G345400 Sobic004G345400 Sobic001G042200 Sobic001G042200 Sobic004G345400--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic004G345400--Sobic010G077500 Sobic009G249700 Sobic009G249700 Sobic004G345400--Sobic009G249700 Sobic007G042900 Sobic007G042900 Sobic004G345400--Sobic007G042900 Sobic004G180900 Sobic004G180900 Sobic004G345400--Sobic004G180900 Sobic006G186400 Sobic006G186400 Sobic004G345400--Sobic006G186400 Sobic004G084500 Sobic004G084500 Sobic004G345400--Sobic004G084500 Sobic007G056500 Sobic007G056500 Sobic004G345400--Sobic007G056500 Sobic003G394200 Sobic003G394200 Sobic004G345400--Sobic003G394200 Sobic001G042200--Sobic010G077500 Sobic001G042200--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic001G042200--Sobic007G187600 Sobic008G058800 Sobic008G058800 Sobic001G042200--Sobic008G058800 Sobic001G042200--Sobic007G056500 Sobic003G212900 Sobic003G212900 Sobic001G042200--Sobic003G212900 Sobic001G042200--Sobic007G042900 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700 Sobic010G077500--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic010G077500--Sobic006G049100 Sobic010G077500--Sobic004G345400 Sobic010G077500--Sobic007G187600 Sobic010G077500--Sobic003G212900 Sobic010G077500--Sobic008G058800 Sobic010G077500--Sobic007G056500 Sobic002G063900 Sobic002G063900 Sobic010G077500--Sobic002G063900 Sobic009G129600 Sobic009G129600 Sobic010G077500--Sobic009G129600 Sobic007G218000 Sobic007G218000 Sobic009G249700--Sobic007G218000 Sobic003G093800 Sobic003G093800 Sobic009G249700--Sobic003G093800 Sobic003G189600 Sobic003G189600 Sobic009G249700--Sobic003G189600 Sobic009G249700--Sobic003G394200 Sobic005G034700 Sobic005G034700 Sobic009G249700--Sobic005G034700 Sobic009G249700--Sobic004G345400 Sobic010G169900 Sobic010G169900 Sobic009G249700--Sobic010G169900 Sobic003G444800 Sobic003G444800 Sobic009G249700--Sobic003G444800 Sobic009G249700--Sobic007G042900 Sobic007G042900--Sobic004G345400 Sobic007G042900--Sobic009G249700 Sobic007G042900--Sobic001G042200 Sobic005G110499 Sobic005G110499 Sobic007G042900--Sobic005G110499 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic001G005600 Sobic001G005600 Sobic007G042900--Sobic001G005600 Sobic009G017200 Sobic009G017200 Sobic004G180900--Sobic009G017200 Sobic004G180900--Sobic007G056500 Sobic001G425000 Sobic001G425000 Sobic004G180900--Sobic001G425000 Sobic004G180900--Sobic004G345400 Sobic004G180900--Sobic006G186400 Sobic004G180900--Sobic008G058800 Sobic007G026000 Sobic007G026000 Sobic004G180900--Sobic007G026000 Sobic004G180900--Sobic010G077500 Sobic003G381600 Sobic003G381600 Sobic004G180900--Sobic003G381600 Sobic008G153000 Sobic008G153000 Sobic006G186400--Sobic008G153000 Sobic001G176200 Sobic001G176200 Sobic006G186400--Sobic001G176200 Sobic004G067700 Sobic004G067700 Sobic006G186400--Sobic004G067700 Sobic008G173100 Sobic008G173100 Sobic006G186400--Sobic008G173100 Sobic006G186400--Sobic007G056500 Sobic002G260400 Sobic002G260400 Sobic006G186400--Sobic002G260400 Sobic006G046700 Sobic006G046700 Sobic006G186400--Sobic006G046700 Sobic003G073000 Sobic003G073000 Sobic006G186400--Sobic003G073000 Sobic001G408700 Sobic001G408700 Sobic006G186400--Sobic001G408700 Sobic004G084500--Sobic003G394200 Sobic004G060300 Sobic004G060300 Sobic004G084500--Sobic004G060300 Sobic009G122500 Sobic009G122500 Sobic004G084500--Sobic009G122500 Sobic001G193100 Sobic001G193100 Sobic004G084500--Sobic001G193100 Sobic004G084500--Sobic004G345400 Sobic003G398400 Sobic003G398400 Sobic004G084500--Sobic003G398400 Sobic010G074900 Sobic010G074900 Sobic004G084500--Sobic010G074900 Sobic006G128100 Sobic006G128100 Sobic004G084500--Sobic006G128100 Sobic006G224300 Sobic006G224300 Sobic004G084500--Sobic006G224300 Sobic007G056500--Sobic006G186400 Sobic002G034600 Sobic002G034600 Sobic007G056500--Sobic002G034600 Sobic007G056500--Sobic001G042200 Sobic007G056500--Sobic010G077500 Sobic010G095700 Sobic010G095700 Sobic007G056500--Sobic010G095700 Sobic007G056500--Sobic004G180900 Sobic001G395100 Sobic001G395100 Sobic007G056500--Sobic001G395100 Sobic001G066300 Sobic001G066300 Sobic007G056500--Sobic001G066300 Sobic006G121300 Sobic006G121300 Sobic007G056500--Sobic006G121300 Sobic003G394200--Sobic004G084500 Sobic006G203300 Sobic006G203300 Sobic003G394200--Sobic006G203300 Sobic003G394200--Sobic006G128100 Sobic010G223400 Sobic010G223400 Sobic003G394200--Sobic010G223400 Sobic001G308400 Sobic001G308400 Sobic003G394200--Sobic001G308400 Sobic009G049400 Sobic009G049400 Sobic003G394200--Sobic009G049400 Sobic003G270600 Sobic003G270600 Sobic003G394200--Sobic003G270600 Sobic003G394200--Sobic003G189600 Sobic001G369000 Sobic001G369000 Sobic003G394200--Sobic001G369000
Octagon: transcription factors


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