Gene annotation
Transcriptome id Sobic.009G022100.1
Synonym sb-RS2Z34, serine/arginine-rich (SR) family, RSZ33, ATRSZ33, Sb09g001910
Functional annotation Putative splicing factor (PubMedID : 24356560)
splicing factor, arginine/serine-rich 7, putative, expressed
UniProt H0I4D2 , C5YZ00
Pfam PF00098 PF00076
Panther DB PTHR23147
NCBI CDD KOG0107; Alternative splicing factor SRp20/9G8 (RRM superfamily)
KEGG Orthology K12896; splicing factor, arginine/serine-rich 7
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G53500 : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
RAP-DB (Rice) LOC_Os03g17710.2 : splicing factor, arginine/serine-rich, putative, expressed
MaizeGDB (Corn) Zm00025a038218 , Zm00025a038217 , Zm00025a040795 , Zm00025a040794
Brachypodium KQK07787 , PNT71943 , PNT71942
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G022100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G095700 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
2 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
3 Sobic.005G030300 protein kinase PKN/PRK1, effector, putative, expressed -
4 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
5 Sobic.008G073000 expressed protein -
6 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
7 Sobic.001G469800 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
8 Sobic.002G362300 prefoldin, putative, expressed -
9 Sobic.001G371000 GTPase of unknown function domain containing protein, putative, expressed K14537: NUG2, nuclear GTP-binding protein
10 Sobic.002G002500 tobamovirus multiplication protein, putative, expressed -
11 Sobic.003G336800 expressed protein -
12 Sobic.004G347100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
13 Sobic.007G046900 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
15 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
16 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -
17 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
18 Sobic.006G248500 expressed protein -
19 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
20 Sobic.005G009200 expressed protein -


Gene co-expression network
sample Sobic009G022100 Sobic009G022100 Sobic002G095700 Sobic002G095700 Sobic009G022100--Sobic002G095700 Sobic003G433500 Sobic003G433500 Sobic009G022100--Sobic003G433500 Sobic005G030300 Sobic005G030300 Sobic009G022100--Sobic005G030300 Sobic009G192500 Sobic009G192500 Sobic009G022100--Sobic009G192500 Sobic008G073000 Sobic008G073000 Sobic009G022100--Sobic008G073000 Sobic006G261100 Sobic006G261100 Sobic009G022100--Sobic006G261100 Sobic001G469800 Sobic001G469800 Sobic009G022100--Sobic001G469800 Sobic002G362300 Sobic002G362300 Sobic009G022100--Sobic002G362300 Sobic001G371000 Sobic001G371000 Sobic009G022100--Sobic001G371000 Sobic006G278200 Sobic006G278200 Sobic002G095700--Sobic006G278200 Sobic002G095700--Sobic008G073000 Sobic002G095700--Sobic005G030300 Sobic008G165100 Sobic008G165100 Sobic002G095700--Sobic008G165100 Sobic002G067800 Sobic002G067800 Sobic002G095700--Sobic002G067800 Sobic002G095700--Sobic003G433500 Sobic002G089900 Sobic002G089900 Sobic002G095700--Sobic002G089900 Sobic002G095700--Sobic009G022100 Sobic004G078100 Sobic004G078100 Sobic002G095700--Sobic004G078100 Sobic009G195200 Sobic009G195200 Sobic003G433500--Sobic009G195200 Sobic003G355000 Sobic003G355000 Sobic003G433500--Sobic003G355000 Sobic002G045400 Sobic002G045400 Sobic003G433500--Sobic002G045400 Sobic009G216000 Sobic009G216000 Sobic003G433500--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic003G433500--Sobic003G354100 Sobic006G267300 Sobic006G267300 Sobic003G433500--Sobic006G267300 Sobic006G248500 Sobic006G248500 Sobic003G433500--Sobic006G248500 Sobic003G433500--Sobic002G362300 Sobic002G259800 Sobic002G259800 Sobic003G433500--Sobic002G259800 Sobic005G030300--Sobic008G073000 Sobic005G030300--Sobic008G165100 Sobic005G030300--Sobic002G095700 Sobic005G030300--Sobic003G433500 Sobic005G030300--Sobic002G045400 Sobic005G030300--Sobic006G278200 Sobic008G101800 Sobic008G101800 Sobic005G030300--Sobic008G101800 Sobic005G030300--Sobic002G362300 Sobic005G030300--Sobic009G022100 Sobic003G132700 Sobic003G132700 Sobic009G192500--Sobic003G132700 Sobic007G117100 Sobic007G117100 Sobic009G192500--Sobic007G117100 Sobic002G430900 Sobic002G430900 Sobic009G192500--Sobic002G430900 Sobic009G192500--Sobic009G022100 Sobic007G125700 Sobic007G125700 Sobic009G192500--Sobic007G125700 Sobic009G192500--Sobic002G095700 Sobic003G253400 Sobic003G253400 Sobic009G192500--Sobic003G253400 Sobic002G223300 Sobic002G223300 Sobic009G192500--Sobic002G223300 Sobic004G229100 Sobic004G229100 Sobic009G192500--Sobic004G229100 Sobic008G073000--Sobic005G030300 Sobic008G073000--Sobic002G045400 Sobic008G073000--Sobic002G095700 Sobic008G073000--Sobic008G101800 Sobic001G202266 Sobic001G202266 Sobic008G073000--Sobic001G202266 Sobic008G073000--Sobic006G278200 Sobic008G073000--Sobic008G165100 Sobic010G174800 Sobic010G174800 Sobic008G073000--Sobic010G174800 Sobic008G073000--Sobic002G067800 Sobic001G038100 Sobic001G038100 Sobic006G261100--Sobic001G038100 Sobic010G095700 Sobic010G095700 Sobic006G261100--Sobic010G095700 Sobic002G276900 Sobic002G276900 Sobic006G261100--Sobic002G276900 Sobic006G261100--Sobic007G117100 Sobic006G261100--Sobic009G022100 Sobic006G120800 Sobic006G120800 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic006G261100--Sobic009G216000 Sobic006G261100--Sobic003G354100 Sobic010G202600 Sobic010G202600 Sobic001G469800--Sobic010G202600 Sobic001G469800--Sobic006G248500 Sobic001G469800--Sobic002G259800 Sobic001G395100 Sobic001G395100 Sobic001G469800--Sobic001G395100 Sobic001G469800--Sobic003G433500 Sobic008G129700 Sobic008G129700 Sobic001G469800--Sobic008G129700 Sobic007G111100 Sobic007G111100 Sobic001G469800--Sobic007G111100 Sobic001G469800--Sobic006G267300 Sobic008G127400 Sobic008G127400 Sobic001G469800--Sobic008G127400 Sobic005G009200 Sobic005G009200 Sobic002G362300--Sobic005G009200 Sobic002G362300--Sobic001G371000 Sobic002G362300--Sobic003G433500 Sobic005G229000 Sobic005G229000 Sobic002G362300--Sobic005G229000 Sobic002G362300--Sobic008G073000 Sobic009G030300 Sobic009G030300 Sobic002G362300--Sobic009G030300 Sobic002G362300--Sobic002G095700 Sobic002G362300--Sobic005G030300 Sobic009G044900 Sobic009G044900 Sobic002G362300--Sobic009G044900 Sobic001G371000--Sobic002G362300 Sobic001G371000--Sobic005G009200 Sobic004G026100 Sobic004G026100 Sobic001G371000--Sobic004G026100 Sobic003G239900 Sobic003G239900 Sobic001G371000--Sobic003G239900 Sobic001G371000--Sobic009G216000 Sobic009G151200 Sobic009G151200 Sobic001G371000--Sobic009G151200 Sobic001G371000--Sobic009G022100 Sobic003G442000 Sobic003G442000 Sobic001G371000--Sobic003G442000 Sobic008G117200 Sobic008G117200 Sobic001G371000--Sobic008G117200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.