Gene annotation
Transcriptome id Sobic.002G002500.1
Synonym Sb02g000400, ATTOM1, TOM1
Functional annotation tobamovirus multiplication protein, putative, expressed
UniProt C5X737
Pfam PF06454
Panther DB PTHR31142 PTHR31142:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G21790 : tobamovirus multiplication 1
RAP-DB (Rice) LOC_Os07g01250.1 : tobamovirus multiplication protein, putative, expressed
MaizeGDB (Corn) Zm00025a016265 , Zm00025a044835
Brachypodium KQK21246
Barley HORVU2Hr1G064610.1 , HORVU2Hr1G064620.2 , HORVU2Hr1G064620.1 , HORVU2Hr1G064620.4 , HORVU2Hr1G064620.5
Wheat TraesCS2D02G266100 , TraesCS2B02G285900 , TraesCS2B02G285900 , TraesCS2D02G266100 , TraesCS2A02G256700
Populus -


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cDNA sequences
Sobic.002G002500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G022100 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
2 Sobic.002G067800 - -
3 Sobic.008G073000 expressed protein -
4 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.008G165100 G-patch domain containing protein, putative, expressed K13103: tuftelin-interacting protein 11
6 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
7 Sobic.005G059100 bromodomain domain containing protein, expressed -
8 Sobic.009G216000 mov34 family protein, putative, expressed K11864: BRCC3, BRCA1/BRCA2-containing complex subunit 3
9 Sobic.002G159200 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
10 Sobic.009G175900 KH domain-containing protein, putative, expressed K14945: protein quaking
11 Sobic.005G030300 protein kinase PKN/PRK1, effector, putative, expressed -
12 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
13 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
14 Sobic.006G217200 PPR repeat domain containing protein, putative, expressed -
15 Sobic.002G329300 basic helix-loop-helix DND-binding domain containing protein, expressed -
16 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
17 Sobic.002G095700 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
18 Sobic.005G120600 Highest expression level in embryo(PubMedID : 27501690)@OsSPL19 - SBP-box gene family member, expressed -
19 Sobic.006G123900 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
20 Sobic.010G153466 - -


Gene co-expression network
sample Sobic002G002500 Sobic002G002500 Sobic009G022100 Sobic009G022100 Sobic002G002500--Sobic009G022100 Sobic002G067800 Sobic002G067800 Sobic002G002500--Sobic002G067800 Sobic008G073000 Sobic008G073000 Sobic002G002500--Sobic008G073000 Sobic002G045400 Sobic002G045400 Sobic002G002500--Sobic002G045400 Sobic008G165100 Sobic008G165100 Sobic002G002500--Sobic008G165100 Sobic003G433500 Sobic003G433500 Sobic002G002500--Sobic003G433500 Sobic005G059100 Sobic005G059100 Sobic002G002500--Sobic005G059100 Sobic009G216000 Sobic009G216000 Sobic002G002500--Sobic009G216000 Sobic002G159200 Sobic002G159200 Sobic002G002500--Sobic002G159200 Sobic002G095700 Sobic002G095700 Sobic009G022100--Sobic002G095700 Sobic009G022100--Sobic003G433500 Sobic005G030300 Sobic005G030300 Sobic009G022100--Sobic005G030300 Sobic009G192500 Sobic009G192500 Sobic009G022100--Sobic009G192500 Sobic009G022100--Sobic008G073000 Sobic006G261100 Sobic006G261100 Sobic009G022100--Sobic006G261100 Sobic001G469800 Sobic001G469800 Sobic009G022100--Sobic001G469800 Sobic002G362300 Sobic002G362300 Sobic009G022100--Sobic002G362300 Sobic001G371000 Sobic001G371000 Sobic009G022100--Sobic001G371000 Sobic010G194700 Sobic010G194700 Sobic002G067800--Sobic010G194700 Sobic002G067800--Sobic008G165100 Sobic002G067800--Sobic005G059100 Sobic002G067800--Sobic002G095700 Sobic002G067800--Sobic008G073000 Sobic002G067800--Sobic002G159200 Sobic003G355000 Sobic003G355000 Sobic002G067800--Sobic003G355000 Sobic007G043500 Sobic007G043500 Sobic002G067800--Sobic007G043500 Sobic006G123900 Sobic006G123900 Sobic002G067800--Sobic006G123900 Sobic008G073000--Sobic005G030300 Sobic008G073000--Sobic002G045400 Sobic008G073000--Sobic002G095700 Sobic008G101800 Sobic008G101800 Sobic008G073000--Sobic008G101800 Sobic001G202266 Sobic001G202266 Sobic008G073000--Sobic001G202266 Sobic006G278200 Sobic006G278200 Sobic008G073000--Sobic006G278200 Sobic008G073000--Sobic008G165100 Sobic010G174800 Sobic010G174800 Sobic008G073000--Sobic010G174800 Sobic008G073000--Sobic002G067800 Sobic002G045400--Sobic008G073000 Sobic002G045400--Sobic003G355000 Sobic002G045400--Sobic003G433500 Sobic008G174300 Sobic008G174300 Sobic002G045400--Sobic008G174300 Sobic002G045400--Sobic008G101800 Sobic009G198100 Sobic009G198100 Sobic002G045400--Sobic009G198100 Sobic002G045400--Sobic009G216000 Sobic010G202600 Sobic010G202600 Sobic002G045400--Sobic010G202600 Sobic002G045400--Sobic005G030300 Sobic008G165100--Sobic002G067800 Sobic008G165100--Sobic010G194700 Sobic008G165100--Sobic008G073000 Sobic008G165100--Sobic005G030300 Sobic008G165100--Sobic002G095700 Sobic008G165100--Sobic006G123900 Sobic002G151600 Sobic002G151600 Sobic008G165100--Sobic002G151600 Sobic008G165100--Sobic003G433500 Sobic008G165100--Sobic002G045400 Sobic009G195200 Sobic009G195200 Sobic003G433500--Sobic009G195200 Sobic003G433500--Sobic003G355000 Sobic003G433500--Sobic002G045400 Sobic003G433500--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic003G433500--Sobic003G354100 Sobic006G267300 Sobic006G267300 Sobic003G433500--Sobic006G267300 Sobic006G248500 Sobic006G248500 Sobic003G433500--Sobic006G248500 Sobic003G433500--Sobic002G362300 Sobic002G259800 Sobic002G259800 Sobic003G433500--Sobic002G259800 Sobic005G059100--Sobic007G043500 Sobic007G026000 Sobic007G026000 Sobic005G059100--Sobic007G026000 Sobic005G059100--Sobic006G123900 Sobic005G059100--Sobic002G067800 Sobic005G059100--Sobic010G194700 Sobic006G080300 Sobic006G080300 Sobic005G059100--Sobic006G080300 Sobic007G185900 Sobic007G185900 Sobic005G059100--Sobic007G185900 Sobic001G206100 Sobic001G206100 Sobic005G059100--Sobic001G206100 Sobic005G059100--Sobic002G159200 Sobic009G216000--Sobic003G433500 Sobic009G216000--Sobic003G355000 Sobic009G216000--Sobic002G045400 Sobic009G216000--Sobic005G030300 Sobic009G216000--Sobic001G371000 Sobic004G013600 Sobic004G013600 Sobic009G216000--Sobic004G013600 Sobic009G216000--Sobic009G198100 Sobic009G216000--Sobic002G362300 Sobic009G216000--Sobic006G261100 Sobic002G159200--Sobic007G043500 Sobic009G000500 Sobic009G000500 Sobic002G159200--Sobic009G000500 Sobic002G159200--Sobic002G067800 Sobic003G307000 Sobic003G307000 Sobic002G159200--Sobic003G307000 Sobic002G159200--Sobic005G059100 Sobic001G405300 Sobic001G405300 Sobic002G159200--Sobic001G405300 Sobic006G046700 Sobic006G046700 Sobic002G159200--Sobic006G046700 Sobic002G159200--Sobic003G355000 Sobic002G159200--Sobic007G026000
Octagon: transcription factors


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