Gene annotation
Transcriptome id Sobic.003G244700.1
Synonym PKP1, Sb03g030110, PKP-BETA1, PKP2
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
pyruvate kinase, putative, expressed
UniProt C5XFC4
Pfam PF02887 PF00224
Panther DB PTHR11817 PTHR11817:SF2
NCBI CDD -
KEGG Orthology K00873; PK, pyruvate kinase
Gene Ontology GO:0006096; glycolytic process GO:0004743pyruvate kinase activity GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT5G52920 : plastidic pyruvate kinase beta subunit 1
RAP-DB (Rice) LOC_Os01g47080.1 : pyruvate kinase, putative, expressed
MaizeGDB (Corn) Zm00025a028170
Brachypodium KQK09027
Barley HORVU3Hr1G059470.6 , HORVU3Hr1G059470.3 , HORVU3Hr1G059470.1 , HORVU3Hr1G059470.14 , HORVU3Hr1G059470.15 , HORVU3Hr1G059470.16 , HORVU3Hr1G059470.17 , HORVU3Hr1G059470.10 , HORVU3Hr1G059470.11 , HORVU3Hr1G059470.12 , HORVU3Hr1G059470.13 , HORVU3Hr1G059470.18 , HORVU3Hr1G059470.19 , HORVU3Hr1G059470.20 , HORVU3Hr1G059470.8 , HORVU3Hr1G059470.9 , HORVU3Hr1G059470.7 , HORVU3Hr1G059470.4 , HORVU3Hr1G059470.5 , HORVU3Hr1G059470.2
Wheat TraesCS3D02G239500 , TraesCS3D02G239500 , TraesCS3B02G267800 , TraesCS3A02G239300 , TraesCS3A02G239300 , TraesCS3B02G267800 , TraesCS3B02G267800
Populus PNT09236 , PNT09237 , PNT09234 , PNT09235


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cDNA sequences
Sobic.003G244700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G203200 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -
2 Sobic.002G253600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
3 Sobic.002G019600 OsFBX234 - F-box domain containing protein, expressed -
4 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
5 Sobic.002G362300 prefoldin, putative, expressed -
6 Sobic.001G371000 GTPase of unknown function domain containing protein, putative, expressed K14537: NUG2, nuclear GTP-binding protein
7 Sobic.010G235500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
8 Sobic.002G016900 OsFBD13 - F-box and FBD domain containing protein, expressed -
9 Sobic.001G384600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
10 Sobic.006G022500 OsFBD9 - F-box and FBD domain containing protein, expressed -
11 Sobic.003G412100 aspartokinase 3, chloroplast precursor, putative, expressed K00928: aspartate kinase
12 Sobic.005G072400 expressed protein -
13 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
14 Sobic.009G022100 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
15 Sobic.004G148600 ankyrin, putative, expressed -
16 Sobic.003G107900 phosphoesterase family protein, putative, expressed K01114: phospholipase C
17 Sobic.003G128600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNAJ heat shock N-terminal domain-containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
18 Sobic.006G250100 tRNA-specific adenosine deaminase 1, putative, expressed K15440: TAD1, tRNA-specific adenosine deaminase 1
19 Sobic.005G009200 expressed protein -
20 Sobic.008G073000 expressed protein -


Gene co-expression network
sample Sobic003G244700 Sobic003G244700 Sobic006G203200 Sobic006G203200 Sobic003G244700--Sobic006G203200 Sobic002G253600 Sobic002G253600 Sobic003G244700--Sobic002G253600 Sobic002G019600 Sobic002G019600 Sobic003G244700--Sobic002G019600 Sobic002G050500 Sobic002G050500 Sobic003G244700--Sobic002G050500 Sobic002G362300 Sobic002G362300 Sobic003G244700--Sobic002G362300 Sobic001G371000 Sobic001G371000 Sobic003G244700--Sobic001G371000 Sobic010G235500 Sobic010G235500 Sobic003G244700--Sobic010G235500 Sobic002G016900 Sobic002G016900 Sobic003G244700--Sobic002G016900 Sobic001G384600 Sobic001G384600 Sobic003G244700--Sobic001G384600 Sobic006G203200--Sobic002G016900 Sobic006G203200--Sobic003G244700 Sobic006G203200--Sobic002G253600 Sobic006G120400 Sobic006G120400 Sobic006G203200--Sobic006G120400 Sobic002G341100 Sobic002G341100 Sobic006G203200--Sobic002G341100 Sobic001G130700 Sobic001G130700 Sobic006G203200--Sobic001G130700 Sobic008G156200 Sobic008G156200 Sobic006G203200--Sobic008G156200 Sobic009G242800 Sobic009G242800 Sobic006G203200--Sobic009G242800 Sobic002G002500 Sobic002G002500 Sobic006G203200--Sobic002G002500 Sobic005G072400 Sobic005G072400 Sobic002G253600--Sobic005G072400 Sobic002G253600--Sobic002G016900 Sobic002G253600--Sobic003G244700 Sobic009G126800 Sobic009G126800 Sobic002G253600--Sobic009G126800 Sobic002G253600--Sobic006G203200 Sobic002G253600--Sobic008G156200 Sobic006G278200 Sobic006G278200 Sobic002G253600--Sobic006G278200 Sobic003G022200 Sobic003G022200 Sobic002G253600--Sobic003G022200 Sobic003G415100 Sobic003G415100 Sobic002G253600--Sobic003G415100 Sobic004G005400 Sobic004G005400 Sobic002G019600--Sobic004G005400 Sobic002G019600--Sobic003G244700 Sobic002G062300 Sobic002G062300 Sobic002G019600--Sobic002G062300 Sobic001G261480 Sobic001G261480 Sobic002G019600--Sobic001G261480 Sobic005G139800 Sobic005G139800 Sobic002G019600--Sobic005G139800 Sobic003G031750 Sobic003G031750 Sobic002G019600--Sobic003G031750 Sobic005G117801 Sobic005G117801 Sobic002G019600--Sobic005G117801 Sobic009G209800 Sobic009G209800 Sobic002G019600--Sobic009G209800 Sobic008G079100 Sobic008G079100 Sobic002G019600--Sobic008G079100 Sobic006G210200 Sobic006G210200 Sobic002G050500--Sobic006G210200 Sobic001G268700 Sobic001G268700 Sobic002G050500--Sobic001G268700 Sobic002G140800 Sobic002G140800 Sobic002G050500--Sobic002G140800 Sobic008G056350 Sobic008G056350 Sobic002G050500--Sobic008G056350 Sobic001G045700 Sobic001G045700 Sobic002G050500--Sobic001G045700 Sobic002G060450 Sobic002G060450 Sobic002G050500--Sobic002G060450 Sobic001G454301 Sobic001G454301 Sobic002G050500--Sobic001G454301 Sobic002G223300 Sobic002G223300 Sobic002G050500--Sobic002G223300 Sobic003G128600 Sobic003G128600 Sobic002G050500--Sobic003G128600 Sobic005G009200 Sobic005G009200 Sobic002G362300--Sobic005G009200 Sobic002G362300--Sobic001G371000 Sobic003G433500 Sobic003G433500 Sobic002G362300--Sobic003G433500 Sobic005G229000 Sobic005G229000 Sobic002G362300--Sobic005G229000 Sobic008G073000 Sobic008G073000 Sobic002G362300--Sobic008G073000 Sobic009G030300 Sobic009G030300 Sobic002G362300--Sobic009G030300 Sobic002G095700 Sobic002G095700 Sobic002G362300--Sobic002G095700 Sobic005G030300 Sobic005G030300 Sobic002G362300--Sobic005G030300 Sobic009G044900 Sobic009G044900 Sobic002G362300--Sobic009G044900 Sobic001G371000--Sobic002G362300 Sobic001G371000--Sobic005G009200 Sobic004G026100 Sobic004G026100 Sobic001G371000--Sobic004G026100 Sobic003G239900 Sobic003G239900 Sobic001G371000--Sobic003G239900 Sobic009G216000 Sobic009G216000 Sobic001G371000--Sobic009G216000 Sobic009G151200 Sobic009G151200 Sobic001G371000--Sobic009G151200 Sobic009G022100 Sobic009G022100 Sobic001G371000--Sobic009G022100 Sobic003G442000 Sobic003G442000 Sobic001G371000--Sobic003G442000 Sobic008G117200 Sobic008G117200 Sobic001G371000--Sobic008G117200 Sobic010G235500--Sobic003G244700 Sobic010G235500--Sobic002G223300 Sobic003G412100 Sobic003G412100 Sobic010G235500--Sobic003G412100 Sobic010G173900 Sobic010G173900 Sobic010G235500--Sobic010G173900 Sobic006G028700 Sobic006G028700 Sobic010G235500--Sobic006G028700 Sobic004G197900 Sobic004G197900 Sobic010G235500--Sobic004G197900 Sobic003G343600 Sobic003G343600 Sobic010G235500--Sobic003G343600 Sobic010G235500--Sobic001G045700 Sobic006G039900 Sobic006G039900 Sobic010G235500--Sobic006G039900 Sobic002G059866 Sobic002G059866 Sobic002G016900--Sobic002G059866 Sobic002G016900--Sobic006G203200 Sobic002G016900--Sobic002G253600 Sobic002G016900--Sobic008G156200 Sobic003G174200 Sobic003G174200 Sobic002G016900--Sobic003G174200 Sobic010G270800 Sobic010G270800 Sobic002G016900--Sobic010G270800 Sobic002G016900--Sobic003G022200 Sobic002G016900--Sobic003G244700 Sobic003G035500 Sobic003G035500 Sobic002G016900--Sobic003G035500 Sobic005G177900 Sobic005G177900 Sobic001G384600--Sobic005G177900 Sobic006G022500 Sobic006G022500 Sobic001G384600--Sobic006G022500 Sobic004G148600 Sobic004G148600 Sobic001G384600--Sobic004G148600 Sobic001G228400 Sobic001G228400 Sobic001G384600--Sobic001G228400 Sobic009G194700 Sobic009G194700 Sobic001G384600--Sobic009G194700 Sobic001G384600--Sobic003G244700 Sobic006G126600 Sobic006G126600 Sobic001G384600--Sobic006G126600 Sobic006G022400 Sobic006G022400 Sobic001G384600--Sobic006G022400 Sobic004G052800 Sobic004G052800 Sobic001G384600--Sobic004G052800
Octagon: transcription factors


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