Gene annotation
| Transcriptome id | Sobic.003G412100.4,Sobic.003G412100.3,Sobic.003G412100.2 |
|---|---|
| Synonym | AK-LYS1, Sb03g044650, AK, AK1 |
| Functional annotation | aspartokinase 3, chloroplast precursor, putative, expressed |
| UniProt | C5XH02 , A0A1B6Q802 |
| Pfam | PF00696 |
| Panther DB | PTHR21499 PTHR21499:SF34 |
| NCBI CDD | - |
| KEGG Orthology | K00928; aspartate kinase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G13280 : aspartate kinase 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g70300.1 : aspartokinase 3, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a026189 , Zm00025a022376 , Zm00025a022375 , Zm00025a054442 , Zm00025a054443 , Zm00025a034375 |
| Brachypodium | KQK11325 |
| Barley | HORVU3Hr1G096500.20 , HORVU3Hr1G096500.9 , HORVU3Hr1G096500.8 , HORVU3Hr1G096500.7 , HORVU3Hr1G096500.6 , HORVU3Hr1G096500.5 , HORVU3Hr1G096500.4 , HORVU3Hr1G096500.3 , HORVU3Hr1G096500.2 , HORVU3Hr1G096500.1 , HORVU3Hr1G096500.13 , HORVU3Hr1G096500.17 , HORVU3Hr1G096500.16 , HORVU3Hr1G096500.15 , HORVU3Hr1G096500.14 , HORVU3Hr1G096500.12 , HORVU3Hr1G096500.11 , HORVU3Hr1G096500.10 , HORVU3Hr1G096500.19 , HORVU3Hr1G096500.18 |
| Wheat | TraesCS3D02G434800 , TraesCS3A02G442100 , TraesCS3A02G442100 , TraesCS3A02G442100 , TraesCS3B02G475900 , TraesCS3B02G475900 |
| Populus | - |
JBrowse
| Sobic.003G412100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G244700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed | K00873: PK, pyruvate kinase |
| 2 | Sobic.002G334600 | OsFBX251 - F-box domain containing protein, expressed | - |
| 3 | Sobic.010G235500 | OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed | - |
| 4 | Sobic.003G184400 | jmjC domain-containing protein 4, putative, expressed | - |
| 5 | Sobic.005G040900 | zinc finger, C3HC4 type domain containing protein, expressed | K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin |
| 6 | Sobic.002G105000 | OsFBD15 - F-box and FBD domain containing protein, expressed | - |
| 7 | Sobic.005G009200 | expressed protein | - |
| 8 | Sobic.002G362300 | prefoldin, putative, expressed | - |
| 9 | Sobic.001G346700 | Ser/Thr protein phosphatase family protein, putative, expressed | - |
| 10 | Sobic.001G090300 | tRNA-splicing endonuclease positive effector-related, putative, expressed | K10706: SETX, senataxin |
| 11 | Sobic.002G223300 | nucleoporin p58/p45, putative, expressed | K14307: NUPL1, nucleoporin p58/p45 |
| 12 | Sobic.004G026100 | tRNA methyltransferase, putative, expressed | K03439: trmB, METTL1, tRNA (guanine-N7-)-methyltransferase |
| 13 | Sobic.006G028700 | expressed protein | - |
| 14 | Sobic.003G417900 | cullin-1, putative, expressed | - |
| 15 | Sobic.006G250100 | tRNA-specific adenosine deaminase 1, putative, expressed | K15440: TAD1, tRNA-specific adenosine deaminase 1 |
| 16 | Sobic.001G371000 | GTPase of unknown function domain containing protein, putative, expressed | K14537: NUG2, nuclear GTP-binding protein |
| 17 | Sobic.005G059400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized PPR-repeat protein, putative, expressed | - |
| 18 | Sobic.001G215400 | OsFBX387 - F-box domain containing protein, expressed | - |
| 19 | Sobic.004G227500 | WD-40 repeat family protein, putative, expressed | - |
| 20 | Sobic.001G187800 | aldose 1-epimerase, putative, expressed | K01785: galM, aldose 1-epimerase |
Gene co-expression network
Octagon: transcription factors
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