Gene annotation
Transcriptome id Sobic.004G026100.1,Sobic.004G026100.3,Sobic.004G026100.4
Synonym Sb04g002310
Functional annotation tRNA methyltransferase, putative, expressed
UniProt C5XTR1
Pfam PF02390
Panther DB PTHR23417:SF16 PTHR23417 PTHR23417 PTHR23417:SF16
NCBI CDD KOG3115; Methyltransferase-like protein
KEGG Orthology K03439; trmB, METTL1, tRNA (guanine-N7-)-methyltransferase
Gene Ontology GO:0006400; tRNA modification GO:0008176tRNA (guanine-N7-)-methyltransferase activity GO:0008176tRNA (guanine-N7-)-methyltransferase activity GO:0006400tRNA modification


Orthologs (automatic annotation)
TAIR AT5G24840 : tRNA (guanine-N-7) methyltransferase
RAP-DB (Rice) LOC_Os06g12990.1 : tRNA methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a034972
Brachypodium -
Barley -
Wheat TraesCS7B02G098200
Populus -


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cDNA sequences
Sobic.004G026100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G371000 GTPase of unknown function domain containing protein, putative, expressed K14537: NUG2, nuclear GTP-binding protein
2 Sobic.005G154700 OsFBX407 - F-box domain containing protein, expressed -
3 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
5 Sobic.005G009200 expressed protein -
6 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
7 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
8 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
9 Sobic.004G197900 - -
10 Sobic.003G115100 importin subunit alpha, putative, expressed -
11 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
12 Sobic.004G012000 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
13 Sobic.003G417900 cullin-1, putative, expressed -
14 Sobic.009G151200 expressed protein -
15 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
16 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
17 Sobic.006G128800 expressed protein -
18 Sobic.006G217200 PPR repeat domain containing protein, putative, expressed -
19 Sobic.004G347100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
20 Sobic.007G000800 expressed protein -


Gene co-expression network
sample Sobic004G026100 Sobic004G026100 Sobic001G371000 Sobic001G371000 Sobic004G026100--Sobic001G371000 Sobic005G154700 Sobic005G154700 Sobic004G026100--Sobic005G154700 Sobic003G248500 Sobic003G248500 Sobic004G026100--Sobic003G248500 Sobic009G030300 Sobic009G030300 Sobic004G026100--Sobic009G030300 Sobic005G009200 Sobic005G009200 Sobic004G026100--Sobic005G009200 Sobic002G421700 Sobic002G421700 Sobic004G026100--Sobic002G421700 Sobic009G040800 Sobic009G040800 Sobic004G026100--Sobic009G040800 Sobic008G117200 Sobic008G117200 Sobic004G026100--Sobic008G117200 Sobic004G197900 Sobic004G197900 Sobic004G026100--Sobic004G197900 Sobic002G362300 Sobic002G362300 Sobic001G371000--Sobic002G362300 Sobic001G371000--Sobic005G009200 Sobic001G371000--Sobic004G026100 Sobic003G239900 Sobic003G239900 Sobic001G371000--Sobic003G239900 Sobic009G216000 Sobic009G216000 Sobic001G371000--Sobic009G216000 Sobic009G151200 Sobic009G151200 Sobic001G371000--Sobic009G151200 Sobic009G022100 Sobic009G022100 Sobic001G371000--Sobic009G022100 Sobic003G442000 Sobic003G442000 Sobic001G371000--Sobic003G442000 Sobic001G371000--Sobic008G117200 Sobic004G012000 Sobic004G012000 Sobic005G154700--Sobic004G012000 Sobic005G154700--Sobic004G026100 Sobic005G154700--Sobic004G197900 Sobic005G154700--Sobic009G040800 Sobic005G015100 Sobic005G015100 Sobic005G154700--Sobic005G015100 Sobic005G127300 Sobic005G127300 Sobic005G154700--Sobic005G127300 Sobic009G000400 Sobic009G000400 Sobic005G154700--Sobic009G000400 Sobic010G235600 Sobic010G235600 Sobic005G154700--Sobic010G235600 Sobic007G079200 Sobic007G079200 Sobic005G154700--Sobic007G079200 Sobic003G359300 Sobic003G359300 Sobic003G248500--Sobic003G359300 Sobic004G283000 Sobic004G283000 Sobic003G248500--Sobic004G283000 Sobic010G174800 Sobic010G174800 Sobic003G248500--Sobic010G174800 Sobic001G390500 Sobic001G390500 Sobic003G248500--Sobic001G390500 Sobic002G197100 Sobic002G197100 Sobic003G248500--Sobic002G197100 Sobic003G185200 Sobic003G185200 Sobic003G248500--Sobic003G185200 Sobic002G365100 Sobic002G365100 Sobic003G248500--Sobic002G365100 Sobic003G051200 Sobic003G051200 Sobic003G248500--Sobic003G051200 Sobic006G128800 Sobic006G128800 Sobic003G248500--Sobic006G128800 Sobic002G177400 Sobic002G177400 Sobic009G030300--Sobic002G177400 Sobic001G226000 Sobic001G226000 Sobic009G030300--Sobic001G226000 Sobic004G061900 Sobic004G061900 Sobic009G030300--Sobic004G061900 Sobic009G044900 Sobic009G044900 Sobic009G030300--Sobic009G044900 Sobic004G013600 Sobic004G013600 Sobic009G030300--Sobic004G013600 Sobic004G088400 Sobic004G088400 Sobic009G030300--Sobic004G088400 Sobic009G030300--Sobic008G117200 Sobic002G334600 Sobic002G334600 Sobic009G030300--Sobic002G334600 Sobic008G129700 Sobic008G129700 Sobic009G030300--Sobic008G129700 Sobic005G009200--Sobic002G362300 Sobic005G009200--Sobic003G442000 Sobic005G009200--Sobic001G371000 Sobic005G009200--Sobic008G129700 Sobic005G009200--Sobic008G117200 Sobic005G009200--Sobic009G151200 Sobic002G259800 Sobic002G259800 Sobic005G009200--Sobic002G259800 Sobic005G009200--Sobic002G421700 Sobic008G034600 Sobic008G034600 Sobic005G009200--Sobic008G034600 Sobic002G421700--Sobic008G034600 Sobic002G421700--Sobic008G117200 Sobic001G454301 Sobic001G454301 Sobic002G421700--Sobic001G454301 Sobic002G061400 Sobic002G061400 Sobic002G421700--Sobic002G061400 Sobic005G015900 Sobic005G015900 Sobic002G421700--Sobic005G015900 Sobic002G421700--Sobic008G129700 Sobic007G116400 Sobic007G116400 Sobic002G421700--Sobic007G116400 Sobic001G094000 Sobic001G094000 Sobic002G421700--Sobic001G094000 Sobic006G217200 Sobic006G217200 Sobic002G421700--Sobic006G217200 Sobic010G278600 Sobic010G278600 Sobic009G040800--Sobic010G278600 Sobic006G091000 Sobic006G091000 Sobic009G040800--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic009G040800--Sobic005G040900 Sobic009G129600 Sobic009G129600 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic004G246100 Sobic004G246100 Sobic009G040800--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic009G040800--Sobic001G042200 Sobic004G353400 Sobic004G353400 Sobic009G040800--Sobic004G353400 Sobic010G263800 Sobic010G263800 Sobic008G117200--Sobic010G263800 Sobic008G117200--Sobic008G034600 Sobic008G117200--Sobic001G094000 Sobic008G117200--Sobic004G088400 Sobic008G117200--Sobic002G177400 Sobic008G117200--Sobic002G421700 Sobic008G117200--Sobic007G116400 Sobic007G011400 Sobic007G011400 Sobic008G117200--Sobic007G011400 Sobic001G477800 Sobic001G477800 Sobic008G117200--Sobic001G477800 Sobic004G197900--Sobic008G117200 Sobic004G197900--Sobic002G421700 Sobic008G152900 Sobic008G152900 Sobic004G197900--Sobic008G152900 Sobic004G197900--Sobic006G128800 Sobic001G425000 Sobic001G425000 Sobic004G197900--Sobic001G425000 Sobic002G051450 Sobic002G051450 Sobic004G197900--Sobic002G051450 Sobic004G197900--Sobic005G015100 Sobic004G197900--Sobic008G034600 Sobic004G197900--Sobic010G263800
Octagon: transcription factors


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