Gene annotation
Transcriptome id Sobic.003G417900.1
Synonym Sb03g045160
Functional annotation cullin-1, putative, expressed
UniProt C5XH48
Pfam PF00888
Panther DB PTHR11932 PTHR11932:SF94
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT1G43140 : Cullin family protein
RAP-DB (Rice) LOC_Os01g70920.2 : cullin-1, putative, expressed
MaizeGDB (Corn) Zm00025a026113
Brachypodium KQK11407
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G417900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
2 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
3 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
4 Sobic.003G354100 expressed protein -
5 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
6 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
7 Sobic.006G092800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
8 Sobic.003G189900 expressed protein -
9 Sobic.008G073000 expressed protein -
10 Sobic.004G007300 expressed protein -
11 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
12 Sobic.004G197900 - -
13 Sobic.004G346100 expressed protein -
14 Sobic.003G442000 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
15 Sobic.010G235600 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
16 Sobic.001G215400 OsFBX387 - F-box domain containing protein, expressed -
17 Sobic.006G128800 expressed protein -
18 Sobic.001G056200 expressed protein -
19 Sobic.005G009200 expressed protein -
20 Sobic.006G248500 expressed protein -


Gene co-expression network
sample Sobic003G417900 Sobic003G417900 Sobic002G197100 Sobic002G197100 Sobic003G417900--Sobic002G197100 Sobic001G390500 Sobic001G390500 Sobic003G417900--Sobic001G390500 Sobic001G408700 Sobic001G408700 Sobic003G417900--Sobic001G408700 Sobic003G354100 Sobic003G354100 Sobic003G417900--Sobic003G354100 Sobic004G013600 Sobic004G013600 Sobic003G417900--Sobic004G013600 Sobic001G425000 Sobic001G425000 Sobic003G417900--Sobic001G425000 Sobic006G092800 Sobic006G092800 Sobic003G417900--Sobic006G092800 Sobic003G189900 Sobic003G189900 Sobic003G417900--Sobic003G189900 Sobic008G073000 Sobic008G073000 Sobic003G417900--Sobic008G073000 Sobic004G007300 Sobic004G007300 Sobic002G197100--Sobic004G007300 Sobic006G173100 Sobic006G173100 Sobic002G197100--Sobic006G173100 Sobic004G345700 Sobic004G345700 Sobic002G197100--Sobic004G345700 Sobic001G176200 Sobic001G176200 Sobic002G197100--Sobic001G176200 Sobic001G090400 Sobic001G090400 Sobic002G197100--Sobic001G090400 Sobic002G197100--Sobic001G425000 Sobic003G248500 Sobic003G248500 Sobic002G197100--Sobic003G248500 Sobic001G514000 Sobic001G514000 Sobic002G197100--Sobic001G514000 Sobic002G370900 Sobic002G370900 Sobic002G197100--Sobic002G370900 Sobic001G083600 Sobic001G083600 Sobic001G390500--Sobic001G083600 Sobic001G390500--Sobic003G248500 Sobic010G055500 Sobic010G055500 Sobic001G390500--Sobic010G055500 Sobic007G111100 Sobic007G111100 Sobic001G390500--Sobic007G111100 Sobic004G263900 Sobic004G263900 Sobic001G390500--Sobic004G263900 Sobic001G390500--Sobic003G189900 Sobic010G174800 Sobic010G174800 Sobic001G390500--Sobic010G174800 Sobic010G071200 Sobic010G071200 Sobic001G390500--Sobic010G071200 Sobic002G084300 Sobic002G084300 Sobic001G390500--Sobic002G084300 Sobic003G205501 Sobic003G205501 Sobic001G408700--Sobic003G205501 Sobic001G408700--Sobic004G007300 Sobic001G408700--Sobic004G345700 Sobic001G056200 Sobic001G056200 Sobic001G408700--Sobic001G056200 Sobic007G118200 Sobic007G118200 Sobic001G408700--Sobic007G118200 Sobic006G267300 Sobic006G267300 Sobic001G408700--Sobic006G267300 Sobic001G408700--Sobic002G197100 Sobic004G283000 Sobic004G283000 Sobic001G408700--Sobic004G283000 Sobic010G245000 Sobic010G245000 Sobic001G408700--Sobic010G245000 Sobic003G433500 Sobic003G433500 Sobic003G354100--Sobic003G433500 Sobic003G354100--Sobic004G013600 Sobic003G132700 Sobic003G132700 Sobic003G354100--Sobic003G132700 Sobic007G117100 Sobic007G117100 Sobic003G354100--Sobic007G117100 Sobic007G188900 Sobic007G188900 Sobic003G354100--Sobic007G188900 Sobic007G139400 Sobic007G139400 Sobic003G354100--Sobic007G139400 Sobic003G354100--Sobic006G092800 Sobic006G248500 Sobic006G248500 Sobic003G354100--Sobic006G248500 Sobic009G129600 Sobic009G129600 Sobic003G354100--Sobic009G129600 Sobic004G013600--Sobic001G056200 Sobic001G028400 Sobic001G028400 Sobic004G013600--Sobic001G028400 Sobic004G013600--Sobic003G354100 Sobic010G211300 Sobic010G211300 Sobic004G013600--Sobic010G211300 Sobic004G013600--Sobic006G248500 Sobic007G205000 Sobic007G205000 Sobic004G013600--Sobic007G205000 Sobic009G030300 Sobic009G030300 Sobic004G013600--Sobic009G030300 Sobic003G437500 Sobic003G437500 Sobic004G013600--Sobic003G437500 Sobic004G013600--Sobic007G118200 Sobic001G425000--Sobic002G197100 Sobic001G425000--Sobic001G176200 Sobic006G046700 Sobic006G046700 Sobic001G425000--Sobic006G046700 Sobic003G445400 Sobic003G445400 Sobic001G425000--Sobic003G445400 Sobic005G015900 Sobic005G015900 Sobic001G425000--Sobic005G015900 Sobic008G152900 Sobic008G152900 Sobic001G425000--Sobic008G152900 Sobic001G202266 Sobic001G202266 Sobic001G425000--Sobic001G202266 Sobic006G186400 Sobic006G186400 Sobic001G425000--Sobic006G186400 Sobic004G180900 Sobic004G180900 Sobic001G425000--Sobic004G180900 Sobic006G092800--Sobic004G007300 Sobic006G092800--Sobic004G345700 Sobic007G088900 Sobic007G088900 Sobic006G092800--Sobic007G088900 Sobic006G092800--Sobic001G056200 Sobic006G128800 Sobic006G128800 Sobic006G092800--Sobic006G128800 Sobic006G092800--Sobic002G197100 Sobic006G254600 Sobic006G254600 Sobic006G092800--Sobic006G254600 Sobic006G092800--Sobic001G408700 Sobic006G092800--Sobic003G437500 Sobic003G189900--Sobic001G390500 Sobic001G309100 Sobic001G309100 Sobic003G189900--Sobic001G309100 Sobic008G108500 Sobic008G108500 Sobic003G189900--Sobic008G108500 Sobic007G038800 Sobic007G038800 Sobic003G189900--Sobic007G038800 Sobic002G176400 Sobic002G176400 Sobic003G189900--Sobic002G176400 Sobic003G311000 Sobic003G311000 Sobic003G189900--Sobic003G311000 Sobic003G189900--Sobic001G083600 Sobic006G002500 Sobic006G002500 Sobic003G189900--Sobic006G002500 Sobic003G189900--Sobic010G071200 Sobic005G030300 Sobic005G030300 Sobic008G073000--Sobic005G030300 Sobic002G045400 Sobic002G045400 Sobic008G073000--Sobic002G045400 Sobic002G095700 Sobic002G095700 Sobic008G073000--Sobic002G095700 Sobic008G101800 Sobic008G101800 Sobic008G073000--Sobic008G101800 Sobic008G073000--Sobic001G202266 Sobic006G278200 Sobic006G278200 Sobic008G073000--Sobic006G278200 Sobic008G165100 Sobic008G165100 Sobic008G073000--Sobic008G165100 Sobic008G073000--Sobic010G174800 Sobic002G067800 Sobic002G067800 Sobic008G073000--Sobic002G067800
Octagon: transcription factors


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