Gene annotation
Transcriptome id Sobic.004G013600.2,Sobic.004G013600.1
Synonym ATATG5, ATG5, APG5, Sb04g001330
Functional annotation autophagy protein 5, putative, expressed
UniProt C5XSC6 , A0A1Z5RKM4
Pfam PF04106
Panther DB PTHR13040 PTHR13040:SF2
NCBI CDD KOG2976; Protein involved in autophagy and nutrient starvation
KEGG Orthology K08339; autophagy-related protein 5
Gene Ontology GO:0006914; autophagy GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT5G17290 : autophagy protein Apg5 family
RAP-DB (Rice) LOC_Os02g02570.1 : autophagy protein 5, putative, expressed
MaizeGDB (Corn) Zm00025a018723
Brachypodium KQJ92925
Barley -
Wheat TraesCS6A02G050200 , TraesCS6B02G066500 , TraesCS6B02G066400 , TraesCS6A02G050300 , TraesCS6A02G050300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G056200 expressed protein -
2 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
3 Sobic.003G354100 expressed protein -
4 Sobic.010G211300 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
5 Sobic.006G248500 expressed protein -
6 Sobic.007G205000 zinc finger family protein, putative, expressed -
7 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
8 Sobic.003G437500 syntaxin 6, putative, expressed -
9 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
10 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
11 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
12 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
13 Sobic.002G084300 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
14 Sobic.007G088900 expressed protein -
15 Sobic.006G092800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
16 Sobic.010G028300 bromodomain domain containing protein, expressed -
17 Sobic.004G345700 TBC domain containing protein, expressed -
18 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
19 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
20 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein


Gene co-expression network
sample Sobic004G013600 Sobic004G013600 Sobic001G056200 Sobic001G056200 Sobic004G013600--Sobic001G056200 Sobic001G028400 Sobic001G028400 Sobic004G013600--Sobic001G028400 Sobic003G354100 Sobic003G354100 Sobic004G013600--Sobic003G354100 Sobic010G211300 Sobic010G211300 Sobic004G013600--Sobic010G211300 Sobic006G248500 Sobic006G248500 Sobic004G013600--Sobic006G248500 Sobic007G205000 Sobic007G205000 Sobic004G013600--Sobic007G205000 Sobic009G030300 Sobic009G030300 Sobic004G013600--Sobic009G030300 Sobic003G437500 Sobic003G437500 Sobic004G013600--Sobic003G437500 Sobic007G118200 Sobic007G118200 Sobic004G013600--Sobic007G118200 Sobic002G084300 Sobic002G084300 Sobic001G056200--Sobic002G084300 Sobic004G263900 Sobic004G263900 Sobic001G056200--Sobic004G263900 Sobic001G408700 Sobic001G408700 Sobic001G056200--Sobic001G408700 Sobic001G056200--Sobic004G013600 Sobic001G056200--Sobic001G028400 Sobic001G056200--Sobic003G437500 Sobic006G088100 Sobic006G088100 Sobic001G056200--Sobic006G088100 Sobic004G007300 Sobic004G007300 Sobic001G056200--Sobic004G007300 Sobic008G174300 Sobic008G174300 Sobic001G056200--Sobic008G174300 Sobic010G033400 Sobic010G033400 Sobic001G028400--Sobic010G033400 Sobic007G063200 Sobic007G063200 Sobic001G028400--Sobic007G063200 Sobic001G028400--Sobic001G056200 Sobic001G028400--Sobic004G263900 Sobic003G359300 Sobic003G359300 Sobic001G028400--Sobic003G359300 Sobic001G028400--Sobic007G205000 Sobic001G028400--Sobic003G437500 Sobic001G028400--Sobic007G118200 Sobic001G028400--Sobic010G211300 Sobic003G433500 Sobic003G433500 Sobic003G354100--Sobic003G433500 Sobic003G354100--Sobic004G013600 Sobic003G132700 Sobic003G132700 Sobic003G354100--Sobic003G132700 Sobic007G117100 Sobic007G117100 Sobic003G354100--Sobic007G117100 Sobic007G188900 Sobic007G188900 Sobic003G354100--Sobic007G188900 Sobic007G139400 Sobic007G139400 Sobic003G354100--Sobic007G139400 Sobic006G092800 Sobic006G092800 Sobic003G354100--Sobic006G092800 Sobic003G354100--Sobic006G248500 Sobic009G129600 Sobic009G129600 Sobic003G354100--Sobic009G129600 Sobic010G211300--Sobic001G028400 Sobic010G211300--Sobic004G013600 Sobic006G267300 Sobic006G267300 Sobic010G211300--Sobic006G267300 Sobic010G211300--Sobic001G056200 Sobic001G083600 Sobic001G083600 Sobic010G211300--Sobic001G083600 Sobic010G211300--Sobic010G033400 Sobic010G211300--Sobic002G084300 Sobic010G211300--Sobic003G437500 Sobic005G000800 Sobic005G000800 Sobic010G211300--Sobic005G000800 Sobic001G469800 Sobic001G469800 Sobic006G248500--Sobic001G469800 Sobic002G259800 Sobic002G259800 Sobic006G248500--Sobic002G259800 Sobic006G248500--Sobic003G433500 Sobic009G151200 Sobic009G151200 Sobic006G248500--Sobic009G151200 Sobic008G058800 Sobic008G058800 Sobic006G248500--Sobic008G058800 Sobic006G248500--Sobic004G013600 Sobic007G026000 Sobic007G026000 Sobic006G248500--Sobic007G026000 Sobic004G347100 Sobic004G347100 Sobic006G248500--Sobic004G347100 Sobic009G044900 Sobic009G044900 Sobic006G248500--Sobic009G044900 Sobic007G205000--Sobic001G028400 Sobic006G278700 Sobic006G278700 Sobic007G205000--Sobic006G278700 Sobic007G205000--Sobic007G118200 Sobic009G198100 Sobic009G198100 Sobic007G205000--Sobic009G198100 Sobic007G205000--Sobic010G033400 Sobic007G205000--Sobic004G013600 Sobic007G205000--Sobic006G267300 Sobic001G010600 Sobic001G010600 Sobic007G205000--Sobic001G010600 Sobic004G350100 Sobic004G350100 Sobic007G205000--Sobic004G350100 Sobic002G177400 Sobic002G177400 Sobic009G030300--Sobic002G177400 Sobic001G226000 Sobic001G226000 Sobic009G030300--Sobic001G226000 Sobic004G061900 Sobic004G061900 Sobic009G030300--Sobic004G061900 Sobic009G030300--Sobic009G044900 Sobic009G030300--Sobic004G013600 Sobic004G088400 Sobic004G088400 Sobic009G030300--Sobic004G088400 Sobic008G117200 Sobic008G117200 Sobic009G030300--Sobic008G117200 Sobic002G334600 Sobic002G334600 Sobic009G030300--Sobic002G334600 Sobic008G129700 Sobic008G129700 Sobic009G030300--Sobic008G129700 Sobic003G437500--Sobic001G028400 Sobic003G437500--Sobic001G056200 Sobic003G437500--Sobic006G088100 Sobic003G202800 Sobic003G202800 Sobic003G437500--Sobic003G202800 Sobic003G437500--Sobic006G092800 Sobic003G437500--Sobic004G013600 Sobic007G088900 Sobic007G088900 Sobic003G437500--Sobic007G088900 Sobic003G437500--Sobic004G263900 Sobic003G437500--Sobic003G359300 Sobic007G118200--Sobic010G033400 Sobic003G081000 Sobic003G081000 Sobic007G118200--Sobic003G081000 Sobic007G118200--Sobic004G350100 Sobic007G118200--Sobic009G198100 Sobic007G118200--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic007G118200--Sobic002G034600 Sobic006G252700 Sobic006G252700 Sobic007G118200--Sobic006G252700 Sobic007G118200--Sobic001G028400 Sobic007G118200--Sobic001G408700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.