Gene annotation
Transcriptome id Sobic.001G371000.1
Synonym Sb01g035280
Functional annotation GTPase of unknown function domain containing protein, putative, expressed
UniProt C5WZS4
Pfam PF01926 PF08153
Panther DB PTHR11089 PTHR11089:SF9
NCBI CDD -
KEGG Orthology K14537; NUG2, nuclear GTP-binding protein
Gene Ontology GO:0005525; GTP binding GO:0005730nucleolus


Orthologs (automatic annotation)
TAIR AT1G52980 : GTP-binding family protein
RAP-DB (Rice) LOC_Os03g22890.1 : GTPase of unknown function domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002479
Brachypodium KQK21675
Barley HORVU4Hr1G049150.3 , HORVU4Hr1G049150.2 , HORVU4Hr1G049150.1 , HORVU4Hr1G049150.4
Wheat TraesCS6A02G165600 , TraesCS5B02G085400 , TraesCS5B02G085400 , TraesCS6A02G165600 , TraesCS6D02G156400 , TraesCS6D02G156400
Populus PNT59303


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cDNA sequences
Sobic.001G371000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G362300 prefoldin, putative, expressed -
2 Sobic.005G009200 expressed protein -
3 Sobic.004G026100 tRNA methyltransferase, putative, expressed K03439: trmB, METTL1, tRNA (guanine-N7-)-methyltransferase
4 Sobic.003G239900 ketol-acid reductoisomerase, chloroplast precursor, putative, expressed K00053: ketol-acid reductoisomerase
5 Sobic.009G216000 mov34 family protein, putative, expressed K11864: BRCC3, BRCA1/BRCA2-containing complex subunit 3
6 Sobic.009G151200 expressed protein -
7 Sobic.009G022100 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
8 Sobic.003G442000 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
9 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
10 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
11 Sobic.004G088400 GTPase-activating protein, putative, expressed -
12 Sobic.006G217200 PPR repeat domain containing protein, putative, expressed -
13 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
14 Sobic.005G030300 protein kinase PKN/PRK1, effector, putative, expressed -
15 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
16 Sobic.003G417900 cullin-1, putative, expressed -
17 Sobic.009G175900 KH domain-containing protein, putative, expressed K14945: protein quaking
18 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
19 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
20 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -


Gene co-expression network
sample Sobic001G371000 Sobic001G371000 Sobic002G362300 Sobic002G362300 Sobic001G371000--Sobic002G362300 Sobic005G009200 Sobic005G009200 Sobic001G371000--Sobic005G009200 Sobic004G026100 Sobic004G026100 Sobic001G371000--Sobic004G026100 Sobic003G239900 Sobic003G239900 Sobic001G371000--Sobic003G239900 Sobic009G216000 Sobic009G216000 Sobic001G371000--Sobic009G216000 Sobic009G151200 Sobic009G151200 Sobic001G371000--Sobic009G151200 Sobic009G022100 Sobic009G022100 Sobic001G371000--Sobic009G022100 Sobic003G442000 Sobic003G442000 Sobic001G371000--Sobic003G442000 Sobic008G117200 Sobic008G117200 Sobic001G371000--Sobic008G117200 Sobic002G362300--Sobic005G009200 Sobic002G362300--Sobic001G371000 Sobic003G433500 Sobic003G433500 Sobic002G362300--Sobic003G433500 Sobic005G229000 Sobic005G229000 Sobic002G362300--Sobic005G229000 Sobic008G073000 Sobic008G073000 Sobic002G362300--Sobic008G073000 Sobic009G030300 Sobic009G030300 Sobic002G362300--Sobic009G030300 Sobic002G095700 Sobic002G095700 Sobic002G362300--Sobic002G095700 Sobic005G030300 Sobic005G030300 Sobic002G362300--Sobic005G030300 Sobic009G044900 Sobic009G044900 Sobic002G362300--Sobic009G044900 Sobic005G009200--Sobic002G362300 Sobic005G009200--Sobic003G442000 Sobic005G009200--Sobic001G371000 Sobic008G129700 Sobic008G129700 Sobic005G009200--Sobic008G129700 Sobic005G009200--Sobic008G117200 Sobic005G009200--Sobic009G151200 Sobic002G259800 Sobic002G259800 Sobic005G009200--Sobic002G259800 Sobic002G421700 Sobic002G421700 Sobic005G009200--Sobic002G421700 Sobic008G034600 Sobic008G034600 Sobic005G009200--Sobic008G034600 Sobic004G026100--Sobic001G371000 Sobic005G154700 Sobic005G154700 Sobic004G026100--Sobic005G154700 Sobic003G248500 Sobic003G248500 Sobic004G026100--Sobic003G248500 Sobic004G026100--Sobic009G030300 Sobic004G026100--Sobic005G009200 Sobic004G026100--Sobic002G421700 Sobic009G040800 Sobic009G040800 Sobic004G026100--Sobic009G040800 Sobic004G026100--Sobic008G117200 Sobic004G197900 Sobic004G197900 Sobic004G026100--Sobic004G197900 Sobic003G239900--Sobic008G117200 Sobic003G267800 Sobic003G267800 Sobic003G239900--Sobic003G267800 Sobic009G175900 Sobic009G175900 Sobic003G239900--Sobic009G175900 Sobic006G217200 Sobic006G217200 Sobic003G239900--Sobic006G217200 Sobic008G078100 Sobic008G078100 Sobic003G239900--Sobic008G078100 Sobic003G239900--Sobic001G371000 Sobic003G239900--Sobic002G421700 Sobic001G039700 Sobic001G039700 Sobic003G239900--Sobic001G039700 Sobic004G031700 Sobic004G031700 Sobic003G239900--Sobic004G031700 Sobic009G216000--Sobic003G433500 Sobic003G355000 Sobic003G355000 Sobic009G216000--Sobic003G355000 Sobic002G045400 Sobic002G045400 Sobic009G216000--Sobic002G045400 Sobic009G216000--Sobic005G030300 Sobic009G216000--Sobic001G371000 Sobic004G013600 Sobic004G013600 Sobic009G216000--Sobic004G013600 Sobic009G198100 Sobic009G198100 Sobic009G216000--Sobic009G198100 Sobic009G216000--Sobic002G362300 Sobic006G261100 Sobic006G261100 Sobic009G216000--Sobic006G261100 Sobic006G248500 Sobic006G248500 Sobic009G151200--Sobic006G248500 Sobic009G151200--Sobic002G259800 Sobic005G133500 Sobic005G133500 Sobic009G151200--Sobic005G133500 Sobic004G285000 Sobic004G285000 Sobic009G151200--Sobic004G285000 Sobic001G424600 Sobic001G424600 Sobic009G151200--Sobic001G424600 Sobic004G085300 Sobic004G085300 Sobic009G151200--Sobic004G085300 Sobic008G100100 Sobic008G100100 Sobic009G151200--Sobic008G100100 Sobic004G086200 Sobic004G086200 Sobic009G151200--Sobic004G086200 Sobic004G156500 Sobic004G156500 Sobic009G151200--Sobic004G156500 Sobic009G022100--Sobic002G095700 Sobic009G022100--Sobic003G433500 Sobic009G022100--Sobic005G030300 Sobic009G192500 Sobic009G192500 Sobic009G022100--Sobic009G192500 Sobic009G022100--Sobic008G073000 Sobic009G022100--Sobic006G261100 Sobic001G469800 Sobic001G469800 Sobic009G022100--Sobic001G469800 Sobic009G022100--Sobic002G362300 Sobic009G022100--Sobic001G371000 Sobic003G442000--Sobic005G009200 Sobic005G015900 Sobic005G015900 Sobic003G442000--Sobic005G015900 Sobic004G018300 Sobic004G018300 Sobic003G442000--Sobic004G018300 Sobic003G258900 Sobic003G258900 Sobic003G442000--Sobic003G258900 Sobic010G202600 Sobic010G202600 Sobic003G442000--Sobic010G202600 Sobic009G074700 Sobic009G074700 Sobic003G442000--Sobic009G074700 Sobic002G197100 Sobic002G197100 Sobic003G442000--Sobic002G197100 Sobic002G158700 Sobic002G158700 Sobic003G442000--Sobic002G158700 Sobic001G090400 Sobic001G090400 Sobic003G442000--Sobic001G090400 Sobic010G263800 Sobic010G263800 Sobic008G117200--Sobic010G263800 Sobic008G117200--Sobic008G034600 Sobic001G094000 Sobic001G094000 Sobic008G117200--Sobic001G094000 Sobic004G088400 Sobic004G088400 Sobic008G117200--Sobic004G088400 Sobic002G177400 Sobic002G177400 Sobic008G117200--Sobic002G177400 Sobic008G117200--Sobic002G421700 Sobic007G116400 Sobic007G116400 Sobic008G117200--Sobic007G116400 Sobic007G011400 Sobic007G011400 Sobic008G117200--Sobic007G011400 Sobic001G477800 Sobic001G477800 Sobic008G117200--Sobic001G477800
Octagon: transcription factors


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