Gene annotation
Transcriptome id Sobic.009G175900.2,Sobic.009G175900.1,Sobic.009G175900.3
Synonym Sb09g023640
Functional annotation KH domain-containing protein, putative, expressed
UniProt A0A1Z5R435 , C5YZU7
Pfam PF00013 PF16544 PF00013
Panther DB PTHR11208 PTHR11208:SF55
NCBI CDD KOG1588; RNA-binding protein Sam68 and related KH domain proteins
KEGG Orthology K14945; protein quaking
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT2G38610 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os05g40290.1,LOC_Os05g40290.3 : KH domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045435 , Zm00025a037797 , Zm00025a044028
Brachypodium KQK05712 , KQK05713
Barley HORVU0Hr1G001050.2 , HORVU0Hr1G001050.3 , HORVU0Hr1G001050.1 , HORVU0Hr1G001050.4 , HORVU0Hr1G001050.5 , HORVU1Hr1G069380.4 , HORVU1Hr1G069380.1 , HORVU1Hr1G069380.3 , HORVU1Hr1G069380.2 , HORVU0Hr1G001300.2 , HORVU0Hr1G001300.3 , HORVU0Hr1G001300.1 , HORVU0Hr1G001300.4 , HORVU0Hr1G001300.5
Wheat TraesCS1D02G302200 , TraesCS1D02G302200 , TraesCS1D02G302200 , TraesCS1A02G302800 , TraesCS1A02G302800 , TraesCS1B02G313100 , TraesCS1B02G313100 , TraesCS1B02G313100
Populus -


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cDNA sequences
Sobic.009G175900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G239900 ketol-acid reductoisomerase, chloroplast precursor, putative, expressed K00053: ketol-acid reductoisomerase
2 Sobic.003G267800 ranBP1 domain containing protein, expressed K15304: Ran-binding protein 3
3 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
4 Sobic.006G217200 PPR repeat domain containing protein, putative, expressed -
5 Sobic.003G442000 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
6 Sobic.001G039700 transcription elongation factor protein, putative, expressed K03145: transcription elongation factor S-II
7 Sobic.004G333700 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
8 Sobic.001G371000 GTPase of unknown function domain containing protein, putative, expressed K14537: NUG2, nuclear GTP-binding protein
9 Sobic.005G009200 expressed protein -
10 Sobic.003G440700 leucine rich repeat domain containing protein, putative, expressed -
11 Sobic.006G133800 myb-like DNA-binding domain containing protein, expressed -
12 Sobic.010G190600 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
13 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
14 Sobic.004G031700 expressed protein -
15 Sobic.002G417800 alpha-galactosidase precursor, putative, expressed K07407: E3.2.1.22B, galA, alpha-galactosidase
16 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
17 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
18 Sobic.001G010300 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4
20 Sobic.004G042100 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic009G175900 Sobic009G175900 Sobic003G239900 Sobic003G239900 Sobic009G175900--Sobic003G239900 Sobic003G267800 Sobic003G267800 Sobic009G175900--Sobic003G267800 Sobic002G421700 Sobic002G421700 Sobic009G175900--Sobic002G421700 Sobic006G217200 Sobic006G217200 Sobic009G175900--Sobic006G217200 Sobic003G442000 Sobic003G442000 Sobic009G175900--Sobic003G442000 Sobic001G039700 Sobic001G039700 Sobic009G175900--Sobic001G039700 Sobic004G333700 Sobic004G333700 Sobic009G175900--Sobic004G333700 Sobic001G371000 Sobic001G371000 Sobic009G175900--Sobic001G371000 Sobic005G009200 Sobic005G009200 Sobic009G175900--Sobic005G009200 Sobic008G117200 Sobic008G117200 Sobic003G239900--Sobic008G117200 Sobic003G239900--Sobic003G267800 Sobic003G239900--Sobic009G175900 Sobic003G239900--Sobic006G217200 Sobic008G078100 Sobic008G078100 Sobic003G239900--Sobic008G078100 Sobic003G239900--Sobic001G371000 Sobic003G239900--Sobic002G421700 Sobic003G239900--Sobic001G039700 Sobic004G031700 Sobic004G031700 Sobic003G239900--Sobic004G031700 Sobic005G133500 Sobic005G133500 Sobic003G267800--Sobic005G133500 Sobic003G258900 Sobic003G258900 Sobic003G267800--Sobic003G258900 Sobic002G058400 Sobic002G058400 Sobic003G267800--Sobic002G058400 Sobic003G267800--Sobic003G239900 Sobic003G267800--Sobic009G175900 Sobic002G158700 Sobic002G158700 Sobic003G267800--Sobic002G158700 Sobic003G440700 Sobic003G440700 Sobic003G267800--Sobic003G440700 Sobic003G267800--Sobic006G217200 Sobic002G396000 Sobic002G396000 Sobic003G267800--Sobic002G396000 Sobic008G034600 Sobic008G034600 Sobic002G421700--Sobic008G034600 Sobic002G421700--Sobic008G117200 Sobic001G454301 Sobic001G454301 Sobic002G421700--Sobic001G454301 Sobic002G061400 Sobic002G061400 Sobic002G421700--Sobic002G061400 Sobic005G015900 Sobic005G015900 Sobic002G421700--Sobic005G015900 Sobic008G129700 Sobic008G129700 Sobic002G421700--Sobic008G129700 Sobic007G116400 Sobic007G116400 Sobic002G421700--Sobic007G116400 Sobic001G094000 Sobic001G094000 Sobic002G421700--Sobic001G094000 Sobic002G421700--Sobic006G217200 Sobic006G217200--Sobic001G454301 Sobic006G217200--Sobic002G421700 Sobic006G217200--Sobic005G133500 Sobic002G259800 Sobic002G259800 Sobic006G217200--Sobic002G259800 Sobic007G000800 Sobic007G000800 Sobic006G217200--Sobic007G000800 Sobic006G217200--Sobic003G239900 Sobic009G151200 Sobic009G151200 Sobic006G217200--Sobic009G151200 Sobic006G217200--Sobic005G009200 Sobic006G013500 Sobic006G013500 Sobic006G217200--Sobic006G013500 Sobic003G442000--Sobic005G009200 Sobic003G442000--Sobic005G015900 Sobic004G018300 Sobic004G018300 Sobic003G442000--Sobic004G018300 Sobic003G442000--Sobic003G258900 Sobic010G202600 Sobic010G202600 Sobic003G442000--Sobic010G202600 Sobic009G074700 Sobic009G074700 Sobic003G442000--Sobic009G074700 Sobic002G197100 Sobic002G197100 Sobic003G442000--Sobic002G197100 Sobic003G442000--Sobic002G158700 Sobic001G090400 Sobic001G090400 Sobic003G442000--Sobic001G090400 Sobic001G039700--Sobic008G034600 Sobic004G271900 Sobic004G271900 Sobic001G039700--Sobic004G271900 Sobic001G056200 Sobic001G056200 Sobic001G039700--Sobic001G056200 Sobic001G039700--Sobic003G440700 Sobic009G022200 Sobic009G022200 Sobic001G039700--Sobic009G022200 Sobic001G039700--Sobic002G421700 Sobic004G061900 Sobic004G061900 Sobic001G039700--Sobic004G061900 Sobic001G221100 Sobic001G221100 Sobic001G039700--Sobic001G221100 Sobic003G359300 Sobic003G359300 Sobic001G039700--Sobic003G359300 Sobic004G333700--Sobic006G013500 Sobic009G000500 Sobic009G000500 Sobic004G333700--Sobic009G000500 Sobic003G445400 Sobic003G445400 Sobic004G333700--Sobic003G445400 Sobic006G076300 Sobic006G076300 Sobic004G333700--Sobic006G076300 Sobic001G315100 Sobic001G315100 Sobic004G333700--Sobic001G315100 Sobic004G333700--Sobic004G031700 Sobic004G333700--Sobic005G015900 Sobic006G133800 Sobic006G133800 Sobic004G333700--Sobic006G133800 Sobic008G152900 Sobic008G152900 Sobic004G333700--Sobic008G152900 Sobic002G362300 Sobic002G362300 Sobic001G371000--Sobic002G362300 Sobic001G371000--Sobic005G009200 Sobic004G026100 Sobic004G026100 Sobic001G371000--Sobic004G026100 Sobic001G371000--Sobic003G239900 Sobic009G216000 Sobic009G216000 Sobic001G371000--Sobic009G216000 Sobic001G371000--Sobic009G151200 Sobic009G022100 Sobic009G022100 Sobic001G371000--Sobic009G022100 Sobic001G371000--Sobic003G442000 Sobic001G371000--Sobic008G117200 Sobic005G009200--Sobic002G362300 Sobic005G009200--Sobic003G442000 Sobic005G009200--Sobic001G371000 Sobic005G009200--Sobic008G129700 Sobic005G009200--Sobic008G117200 Sobic005G009200--Sobic009G151200 Sobic005G009200--Sobic002G259800 Sobic005G009200--Sobic002G421700 Sobic005G009200--Sobic008G034600
Octagon: transcription factors


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