Gene annotation
Transcriptome id Sobic.003G267800.1
Synonym Sb03g032040
Functional annotation ranBP1 domain containing protein, expressed
UniProt C5XHI5
Pfam PF00638 PF08911
Panther DB PTHR23138 PTHR23138:SF99
NCBI CDD KOG2724; Nuclear pore complex component NPAP60L/NUP50
KEGG Orthology K15304; Ran-binding protein 3
Gene Ontology GO:0005643; nuclear pore


Orthologs (automatic annotation)
TAIR AT3G15970 : NUP50 (Nucleoporin 50 kDa) protein
RAP-DB (Rice) LOC_Os05g28190.1 : ranBP1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a027908 , Zm00025a038896
Brachypodium KQK17227
Barley HORVU7Hr1G101390.1 , HORVU7Hr1G101390.5 , HORVU7Hr1G101390.4 , HORVU7Hr1G101390.6 , HORVU7Hr1G101390.9 , HORVU7Hr1G101390.8 , HORVU1Hr1G059860.2 , HORVU1Hr1G059860.1
Wheat TraesCS7B02G342800 , TraesCS7B02G342800
Populus -


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cDNA sequences
Sobic.003G267800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G133500 expressed protein -
2 Sobic.003G258900 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
3 Sobic.002G058400 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
4 Sobic.003G239900 ketol-acid reductoisomerase, chloroplast precursor, putative, expressed K00053: ketol-acid reductoisomerase
5 Sobic.009G175900 KH domain-containing protein, putative, expressed K14945: protein quaking
6 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
7 Sobic.003G440700 leucine rich repeat domain containing protein, putative, expressed -
8 Sobic.006G217200 PPR repeat domain containing protein, putative, expressed -
9 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
10 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4
11 Sobic.009G151200 expressed protein -
12 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
13 Sobic.008G131000 domain of unknown function family protein, expressed -
14 Sobic.001G138400 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
15 Sobic.001G081000 nucleotide-binding protein-like, putative, expressed K03593: mrp, ATP-binding protein involved in chromosome partitioning
16 Sobic.004G031700 expressed protein -
17 Sobic.003G353600 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
18 Sobic.008G078100 EDM2, putative, expressed -
19 Sobic.009G135800 CUE domain containing protein, expressed -
20 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic003G267800 Sobic003G267800 Sobic005G133500 Sobic005G133500 Sobic003G267800--Sobic005G133500 Sobic003G258900 Sobic003G258900 Sobic003G267800--Sobic003G258900 Sobic002G058400 Sobic002G058400 Sobic003G267800--Sobic002G058400 Sobic003G239900 Sobic003G239900 Sobic003G267800--Sobic003G239900 Sobic009G175900 Sobic009G175900 Sobic003G267800--Sobic009G175900 Sobic002G158700 Sobic002G158700 Sobic003G267800--Sobic002G158700 Sobic003G440700 Sobic003G440700 Sobic003G267800--Sobic003G440700 Sobic006G217200 Sobic006G217200 Sobic003G267800--Sobic006G217200 Sobic002G396000 Sobic002G396000 Sobic003G267800--Sobic002G396000 Sobic009G151200 Sobic009G151200 Sobic005G133500--Sobic009G151200 Sobic002G423200 Sobic002G423200 Sobic005G133500--Sobic002G423200 Sobic005G133500--Sobic003G267800 Sobic002G259800 Sobic002G259800 Sobic005G133500--Sobic002G259800 Sobic005G133500--Sobic006G217200 Sobic008G131000 Sobic008G131000 Sobic005G133500--Sobic008G131000 Sobic004G246100 Sobic004G246100 Sobic005G133500--Sobic004G246100 Sobic010G236400 Sobic010G236400 Sobic005G133500--Sobic010G236400 Sobic001G080900 Sobic001G080900 Sobic005G133500--Sobic001G080900 Sobic003G258900--Sobic002G396000 Sobic003G258900--Sobic002G158700 Sobic003G258900--Sobic003G267800 Sobic006G102100 Sobic006G102100 Sobic003G258900--Sobic006G102100 Sobic001G081000 Sobic001G081000 Sobic003G258900--Sobic001G081000 Sobic006G226300 Sobic006G226300 Sobic003G258900--Sobic006G226300 Sobic003G442000 Sobic003G442000 Sobic003G258900--Sobic003G442000 Sobic009G225200 Sobic009G225200 Sobic003G258900--Sobic009G225200 Sobic009G046700 Sobic009G046700 Sobic003G258900--Sobic009G046700 Sobic002G058400--Sobic003G267800 Sobic001G504200 Sobic001G504200 Sobic002G058400--Sobic001G504200 Sobic002G058400--Sobic005G133500 Sobic009G135800 Sobic009G135800 Sobic002G058400--Sobic009G135800 Sobic004G223600 Sobic004G223600 Sobic002G058400--Sobic004G223600 Sobic002G058400--Sobic004G246100 Sobic006G245400 Sobic006G245400 Sobic002G058400--Sobic006G245400 Sobic002G058400--Sobic002G396000 Sobic001G509500 Sobic001G509500 Sobic002G058400--Sobic001G509500 Sobic008G117200 Sobic008G117200 Sobic003G239900--Sobic008G117200 Sobic003G239900--Sobic003G267800 Sobic003G239900--Sobic009G175900 Sobic003G239900--Sobic006G217200 Sobic008G078100 Sobic008G078100 Sobic003G239900--Sobic008G078100 Sobic001G371000 Sobic001G371000 Sobic003G239900--Sobic001G371000 Sobic002G421700 Sobic002G421700 Sobic003G239900--Sobic002G421700 Sobic001G039700 Sobic001G039700 Sobic003G239900--Sobic001G039700 Sobic004G031700 Sobic004G031700 Sobic003G239900--Sobic004G031700 Sobic009G175900--Sobic003G239900 Sobic009G175900--Sobic003G267800 Sobic009G175900--Sobic002G421700 Sobic009G175900--Sobic006G217200 Sobic009G175900--Sobic003G442000 Sobic009G175900--Sobic001G039700 Sobic004G333700 Sobic004G333700 Sobic009G175900--Sobic004G333700 Sobic009G175900--Sobic001G371000 Sobic005G009200 Sobic005G009200 Sobic009G175900--Sobic005G009200 Sobic003G401000 Sobic003G401000 Sobic002G158700--Sobic003G401000 Sobic001G464200 Sobic001G464200 Sobic002G158700--Sobic001G464200 Sobic001G167200 Sobic001G167200 Sobic002G158700--Sobic001G167200 Sobic002G158700--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic002G158700--Sobic003G445400 Sobic007G000800 Sobic007G000800 Sobic002G158700--Sobic007G000800 Sobic007G061700 Sobic007G061700 Sobic002G158700--Sobic007G061700 Sobic008G149800 Sobic008G149800 Sobic002G158700--Sobic008G149800 Sobic002G158700--Sobic002G396000 Sobic008G034600 Sobic008G034600 Sobic003G440700--Sobic008G034600 Sobic006G128900 Sobic006G128900 Sobic003G440700--Sobic006G128900 Sobic003G440700--Sobic001G039700 Sobic004G271900 Sobic004G271900 Sobic003G440700--Sobic004G271900 Sobic001G094000 Sobic001G094000 Sobic003G440700--Sobic001G094000 Sobic003G440700--Sobic002G421700 Sobic001G090400 Sobic001G090400 Sobic003G440700--Sobic001G090400 Sobic009G117400 Sobic009G117400 Sobic003G440700--Sobic009G117400 Sobic007G011400 Sobic007G011400 Sobic003G440700--Sobic007G011400 Sobic001G454301 Sobic001G454301 Sobic006G217200--Sobic001G454301 Sobic006G217200--Sobic002G421700 Sobic006G217200--Sobic005G133500 Sobic006G217200--Sobic002G259800 Sobic006G217200--Sobic007G000800 Sobic006G217200--Sobic003G239900 Sobic006G217200--Sobic009G151200 Sobic006G217200--Sobic005G009200 Sobic006G013500 Sobic006G013500 Sobic006G217200--Sobic006G013500 Sobic002G396000--Sobic002G158700 Sobic002G396000--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic002G396000--Sobic007G096000 Sobic003G280800 Sobic003G280800 Sobic002G396000--Sobic003G280800 Sobic001G511500 Sobic001G511500 Sobic002G396000--Sobic001G511500 Sobic009G210500 Sobic009G210500 Sobic002G396000--Sobic009G210500 Sobic004G018300 Sobic004G018300 Sobic002G396000--Sobic004G018300 Sobic002G396000--Sobic008G131000 Sobic002G396000--Sobic001G090400
Octagon: transcription factors


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