Gene annotation
Transcriptome id Sobic.003G353600.1
Synonym APUM1, PUM1, Sb03g039600
Functional annotation pumilio-family RNA binding protein, putative, expressed
UniProt C5XPQ8
Pfam PF07990 PF00806
Panther DB PTHR12537:SF12 PTHR12537
NCBI CDD -
KEGG Orthology K17943; pumilio RNA-binding family
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT2G29200 : pumilio 1
RAP-DB (Rice) LOC_Os01g62650.1 : pumilio-family RNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a040956 , Zm00025a012451 , Zm00025a055626 , Zm00025a038275
Brachypodium KQK08049 , PNT72103
Barley HORVU3Hr1G086020.1 , HORVU3Hr1G086020.3 , HORVU3Hr1G086020.2 , HORVU1Hr1G004200.15 , HORVU1Hr1G004200.14 , HORVU1Hr1G004200.17 , HORVU1Hr1G004200.16 , HORVU1Hr1G004200.11 , HORVU1Hr1G004200.10 , HORVU1Hr1G004200.13 , HORVU1Hr1G004200.12 , HORVU1Hr1G004200.9 , HORVU1Hr1G004200.8 , HORVU1Hr1G004200.1 , HORVU1Hr1G004200.3 , HORVU1Hr1G004200.2 , HORVU1Hr1G004200.5 , HORVU1Hr1G004200.4 , HORVU1Hr1G004200.7 , HORVU1Hr1G004200.6
Wheat TraesCS5D02G282300 , TraesCS1A02G029200 , TraesCS1B02G036400 , TraesCS3D02G355400 , TraesCS3D02G355400 , TraesCS3D02G355400 , TraesCS3D02G355400 , TraesCS3D02G355400 , TraesCS3B02G394100 , TraesCS3B02G394100 , TraesCS3B02G394100 , TraesCS3B02G394100 , TraesCS3B02G394100 , TraesCS3B02G394100 , TraesCS3B02G394100 , TraesCS3A02G361700 , TraesCS5B02G274400 , TraesCS5A02G274700 , TraesCS1D02G029400 , TraesCS3A02G361700 , TraesCS3A02G361700 , TraesCS3A02G361700 , TraesCS3A02G361700 , TraesCS3A02G361700 , TraesCS3A02G361700 , TraesCS3A02G361700 , TraesCS3A02G361700
Populus PNT17648 , PNT17649


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G056000 OsFBL16 - F-box domain and LRR containing protein, expressed -
2 Sobic.001G138400 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
3 Sobic.002G423200 importin subunit alpha-1b, putative, expressed -
4 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
5 Sobic.002G076000 transporter-related, putative, expressed -
6 Sobic.010G083000 expressed protein -
7 Sobic.007G031600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
8 Sobic.008G131000 domain of unknown function family protein, expressed -
9 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
10 Sobic.005G084100 Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(PubMedID : 31721651)@inactive receptor kinase At1g27190 precursor, putative, expressed -
11 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
12 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
13 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
14 Sobic.006G215050 - -
15 Sobic.005G133500 expressed protein -
16 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
17 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.003G267800 ranBP1 domain containing protein, expressed K15304: Ran-binding protein 3
19 Sobic.001G142100 WD domain, G-beta repeat domain containing protein, expressed K04536: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
20 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3


Gene co-expression network
sample Sobic003G353600 Sobic003G353600 Sobic006G056000 Sobic006G056000 Sobic003G353600--Sobic006G056000 Sobic001G138400 Sobic001G138400 Sobic003G353600--Sobic001G138400 Sobic002G423200 Sobic002G423200 Sobic003G353600--Sobic002G423200 Sobic004G086200 Sobic004G086200 Sobic003G353600--Sobic004G086200 Sobic002G076000 Sobic002G076000 Sobic003G353600--Sobic002G076000 Sobic010G083000 Sobic010G083000 Sobic003G353600--Sobic010G083000 Sobic007G031600 Sobic007G031600 Sobic003G353600--Sobic007G031600 Sobic008G131000 Sobic008G131000 Sobic003G353600--Sobic008G131000 Sobic004G285000 Sobic004G285000 Sobic003G353600--Sobic004G285000 Sobic006G056000--Sobic003G353600 Sobic006G056000--Sobic002G076000 Sobic005G084100 Sobic005G084100 Sobic006G056000--Sobic005G084100 Sobic004G111000 Sobic004G111000 Sobic006G056000--Sobic004G111000 Sobic002G079100 Sobic002G079100 Sobic006G056000--Sobic002G079100 Sobic006G056000--Sobic001G138400 Sobic006G056000--Sobic004G285000 Sobic006G047100 Sobic006G047100 Sobic006G056000--Sobic006G047100 Sobic006G210000 Sobic006G210000 Sobic006G056000--Sobic006G210000 Sobic001G542700 Sobic001G542700 Sobic001G138400--Sobic001G542700 Sobic001G138400--Sobic003G353600 Sobic001G138400--Sobic002G423200 Sobic008G100100 Sobic008G100100 Sobic001G138400--Sobic008G100100 Sobic003G293200 Sobic003G293200 Sobic001G138400--Sobic003G293200 Sobic001G138400--Sobic007G031600 Sobic005G216300 Sobic005G216300 Sobic001G138400--Sobic005G216300 Sobic009G151200 Sobic009G151200 Sobic001G138400--Sobic009G151200 Sobic007G061700 Sobic007G061700 Sobic001G138400--Sobic007G061700 Sobic002G259800 Sobic002G259800 Sobic002G423200--Sobic002G259800 Sobic005G133500 Sobic005G133500 Sobic002G423200--Sobic005G133500 Sobic004G246100 Sobic004G246100 Sobic002G423200--Sobic004G246100 Sobic006G248500 Sobic006G248500 Sobic002G423200--Sobic006G248500 Sobic008G127400 Sobic008G127400 Sobic002G423200--Sobic008G127400 Sobic010G236400 Sobic010G236400 Sobic002G423200--Sobic010G236400 Sobic002G423200--Sobic003G353600 Sobic002G423200--Sobic001G138400 Sobic006G138000 Sobic006G138000 Sobic002G423200--Sobic006G138000 Sobic001G346900 Sobic001G346900 Sobic004G086200--Sobic001G346900 Sobic004G086200--Sobic004G285000 Sobic001G134300 Sobic001G134300 Sobic004G086200--Sobic001G134300 Sobic001G245900 Sobic001G245900 Sobic004G086200--Sobic001G245900 Sobic001G306900 Sobic001G306900 Sobic004G086200--Sobic001G306900 Sobic010G096000 Sobic010G096000 Sobic004G086200--Sobic010G096000 Sobic010G279900 Sobic010G279900 Sobic004G086200--Sobic010G279900 Sobic001G246500 Sobic001G246500 Sobic004G086200--Sobic001G246500 Sobic010G065300 Sobic010G065300 Sobic004G086200--Sobic010G065300 Sobic002G076000--Sobic006G056000 Sobic002G076000--Sobic005G084100 Sobic002G076000--Sobic003G353600 Sobic003G070100 Sobic003G070100 Sobic002G076000--Sobic003G070100 Sobic009G100050 Sobic009G100050 Sobic002G076000--Sobic009G100050 Sobic004G232000 Sobic004G232000 Sobic002G076000--Sobic004G232000 Sobic004G325400 Sobic004G325400 Sobic002G076000--Sobic004G325400 Sobic009G213100 Sobic009G213100 Sobic002G076000--Sobic009G213100 Sobic002G076000--Sobic010G083000 Sobic007G202600 Sobic007G202600 Sobic010G083000--Sobic007G202600 Sobic010G083000--Sobic003G353600 Sobic010G083000--Sobic002G076000 Sobic010G083000--Sobic002G423200 Sobic002G288000 Sobic002G288000 Sobic010G083000--Sobic002G288000 Sobic008G133400 Sobic008G133400 Sobic010G083000--Sobic008G133400 Sobic007G041500 Sobic007G041500 Sobic010G083000--Sobic007G041500 Sobic009G257800 Sobic009G257800 Sobic010G083000--Sobic009G257800 Sobic006G217200 Sobic006G217200 Sobic010G083000--Sobic006G217200 Sobic007G031600--Sobic003G293200 Sobic009G166100 Sobic009G166100 Sobic007G031600--Sobic009G166100 Sobic007G031600--Sobic006G210000 Sobic007G031600--Sobic008G100100 Sobic004G156500 Sobic004G156500 Sobic007G031600--Sobic004G156500 Sobic001G170100 Sobic001G170100 Sobic007G031600--Sobic001G170100 Sobic007G031600--Sobic008G131000 Sobic001G352900 Sobic001G352900 Sobic007G031600--Sobic001G352900 Sobic004G009600 Sobic004G009600 Sobic007G031600--Sobic004G009600 Sobic008G131000--Sobic010G236400 Sobic008G083000 Sobic008G083000 Sobic008G131000--Sobic008G083000 Sobic003G266001 Sobic003G266001 Sobic008G131000--Sobic003G266001 Sobic002G396000 Sobic002G396000 Sobic008G131000--Sobic002G396000 Sobic010G209400 Sobic010G209400 Sobic008G131000--Sobic010G209400 Sobic003G401100 Sobic003G401100 Sobic008G131000--Sobic003G401100 Sobic006G194400 Sobic006G194400 Sobic008G131000--Sobic006G194400 Sobic004G084300 Sobic004G084300 Sobic008G131000--Sobic004G084300 Sobic003G187500 Sobic003G187500 Sobic008G131000--Sobic003G187500 Sobic004G285000--Sobic004G086200 Sobic004G285000--Sobic004G111000 Sobic004G285000--Sobic001G346900 Sobic003G427100 Sobic003G427100 Sobic004G285000--Sobic003G427100 Sobic004G285000--Sobic009G151200 Sobic010G215900 Sobic010G215900 Sobic004G285000--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic004G285000--Sobic003G409200 Sobic007G044100 Sobic007G044100 Sobic004G285000--Sobic007G044100 Sobic001G013300 Sobic001G013300 Sobic004G285000--Sobic001G013300
Octagon: transcription factors


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