Gene annotation
Transcriptome id Sobic.006G056000.1
Synonym AFB2, Sb06g014420
Functional annotation OsFBL16 - F-box domain and LRR containing protein, expressed
UniProt A0A1B6PKE7
Pfam PF12937
Panther DB PTHR24006 PTHR24006:SF456
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G26810 : auxin signaling F-box 2
RAP-DB (Rice) LOC_Os04g32460.1 : OsFBL16 - F-box domain and LRR containing protein, expressed
MaizeGDB (Corn) Zm00025a055936 , Zm00025a011699
Brachypodium KQJ82384
Barley HORVU2Hr1G070800.3 , HORVU2Hr1G070800.2 , HORVU2Hr1G070800.1
Wheat TraesCS2D02G285000 , TraesCS2D02G285000 , TraesCS2B02G302900 , TraesCS2A02G286200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G353600 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
2 Sobic.002G076000 transporter-related, putative, expressed -
3 Sobic.005G084100 Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(PubMedID : 31721651)@inactive receptor kinase At1g27190 precursor, putative, expressed -
4 Sobic.004G111000 bromodomain containing protein, expressed -
5 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
6 Sobic.001G138400 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
7 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
8 Sobic.006G047100 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
9 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
10 Sobic.010G050700 protein kinase, putative, expressed -
11 Sobic.007G043900 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
12 Sobic.002G192500 ES43 protein, putative, expressed -
13 Sobic.007G031600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
14 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
15 Sobic.004G232000 TLD family protein, putative, expressed -
16 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
17 Sobic.004G096500 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
18 Sobic.001G367100 pleckstrin homology domain-containing protein, putative, expressed -
19 Sobic.002G010800 NBS-LRR disease resistance protein, putative, expressed K13457: RPM1, disease resistance protein RPM1
20 Sobic.002G309200 FAR1 family protein, expressed -


Gene co-expression network
sample Sobic006G056000 Sobic006G056000 Sobic003G353600 Sobic003G353600 Sobic006G056000--Sobic003G353600 Sobic002G076000 Sobic002G076000 Sobic006G056000--Sobic002G076000 Sobic005G084100 Sobic005G084100 Sobic006G056000--Sobic005G084100 Sobic004G111000 Sobic004G111000 Sobic006G056000--Sobic004G111000 Sobic002G079100 Sobic002G079100 Sobic006G056000--Sobic002G079100 Sobic001G138400 Sobic001G138400 Sobic006G056000--Sobic001G138400 Sobic004G285000 Sobic004G285000 Sobic006G056000--Sobic004G285000 Sobic006G047100 Sobic006G047100 Sobic006G056000--Sobic006G047100 Sobic006G210000 Sobic006G210000 Sobic006G056000--Sobic006G210000 Sobic003G353600--Sobic006G056000 Sobic003G353600--Sobic001G138400 Sobic002G423200 Sobic002G423200 Sobic003G353600--Sobic002G423200 Sobic004G086200 Sobic004G086200 Sobic003G353600--Sobic004G086200 Sobic003G353600--Sobic002G076000 Sobic010G083000 Sobic010G083000 Sobic003G353600--Sobic010G083000 Sobic007G031600 Sobic007G031600 Sobic003G353600--Sobic007G031600 Sobic008G131000 Sobic008G131000 Sobic003G353600--Sobic008G131000 Sobic003G353600--Sobic004G285000 Sobic002G076000--Sobic006G056000 Sobic002G076000--Sobic005G084100 Sobic002G076000--Sobic003G353600 Sobic003G070100 Sobic003G070100 Sobic002G076000--Sobic003G070100 Sobic009G100050 Sobic009G100050 Sobic002G076000--Sobic009G100050 Sobic004G232000 Sobic004G232000 Sobic002G076000--Sobic004G232000 Sobic004G325400 Sobic004G325400 Sobic002G076000--Sobic004G325400 Sobic009G213100 Sobic009G213100 Sobic002G076000--Sobic009G213100 Sobic002G076000--Sobic010G083000 Sobic008G083000 Sobic008G083000 Sobic005G084100--Sobic008G083000 Sobic002G259800 Sobic002G259800 Sobic005G084100--Sobic002G259800 Sobic001G360900 Sobic001G360900 Sobic005G084100--Sobic001G360900 Sobic010G279700 Sobic010G279700 Sobic005G084100--Sobic010G279700 Sobic005G084100--Sobic002G076000 Sobic001G094000 Sobic001G094000 Sobic005G084100--Sobic001G094000 Sobic002G090800 Sobic002G090800 Sobic005G084100--Sobic002G090800 Sobic005G084100--Sobic008G131000 Sobic005G084100--Sobic006G056000 Sobic004G111000--Sobic004G285000 Sobic003G409200 Sobic003G409200 Sobic004G111000--Sobic003G409200 Sobic010G215900 Sobic010G215900 Sobic004G111000--Sobic010G215900 Sobic007G044100 Sobic007G044100 Sobic004G111000--Sobic007G044100 Sobic010G279900 Sobic010G279900 Sobic004G111000--Sobic010G279900 Sobic004G043750 Sobic004G043750 Sobic004G111000--Sobic004G043750 Sobic004G111000--Sobic006G056000 Sobic004G111000--Sobic004G086200 Sobic002G263700 Sobic002G263700 Sobic004G111000--Sobic002G263700 Sobic003G124600 Sobic003G124600 Sobic002G079100--Sobic003G124600 Sobic001G448100 Sobic001G448100 Sobic002G079100--Sobic001G448100 Sobic008G017100 Sobic008G017100 Sobic002G079100--Sobic008G017100 Sobic008G080500 Sobic008G080500 Sobic002G079100--Sobic008G080500 Sobic002G380100 Sobic002G380100 Sobic002G079100--Sobic002G380100 Sobic002G292800 Sobic002G292800 Sobic002G079100--Sobic002G292800 Sobic010G278600 Sobic010G278600 Sobic002G079100--Sobic010G278600 Sobic006G245900 Sobic006G245900 Sobic002G079100--Sobic006G245900 Sobic001G482200 Sobic001G482200 Sobic002G079100--Sobic001G482200 Sobic001G542700 Sobic001G542700 Sobic001G138400--Sobic001G542700 Sobic001G138400--Sobic003G353600 Sobic001G138400--Sobic002G423200 Sobic008G100100 Sobic008G100100 Sobic001G138400--Sobic008G100100 Sobic003G293200 Sobic003G293200 Sobic001G138400--Sobic003G293200 Sobic001G138400--Sobic007G031600 Sobic005G216300 Sobic005G216300 Sobic001G138400--Sobic005G216300 Sobic009G151200 Sobic009G151200 Sobic001G138400--Sobic009G151200 Sobic007G061700 Sobic007G061700 Sobic001G138400--Sobic007G061700 Sobic004G285000--Sobic004G086200 Sobic004G285000--Sobic004G111000 Sobic001G346900 Sobic001G346900 Sobic004G285000--Sobic001G346900 Sobic003G427100 Sobic003G427100 Sobic004G285000--Sobic003G427100 Sobic004G285000--Sobic009G151200 Sobic004G285000--Sobic010G215900 Sobic004G285000--Sobic003G409200 Sobic004G285000--Sobic007G044100 Sobic001G013300 Sobic001G013300 Sobic004G285000--Sobic001G013300 Sobic006G047100--Sobic005G084100 Sobic006G047100--Sobic006G056000 Sobic010G249300 Sobic010G249300 Sobic006G047100--Sobic010G249300 Sobic002G192500 Sobic002G192500 Sobic006G047100--Sobic002G192500 Sobic009G112400 Sobic009G112400 Sobic006G047100--Sobic009G112400 Sobic006G047100--Sobic004G232000 Sobic002G131300 Sobic002G131300 Sobic006G047100--Sobic002G131300 Sobic006G047100--Sobic002G076000 Sobic001G057200 Sobic001G057200 Sobic006G047100--Sobic001G057200 Sobic010G001100 Sobic010G001100 Sobic006G210000--Sobic010G001100 Sobic006G210000--Sobic003G293200 Sobic004G156500 Sobic004G156500 Sobic006G210000--Sobic004G156500 Sobic010G065300 Sobic010G065300 Sobic006G210000--Sobic010G065300 Sobic004G355800 Sobic004G355800 Sobic006G210000--Sobic004G355800 Sobic006G210000--Sobic007G031600 Sobic006G210000--Sobic008G100100 Sobic006G052300 Sobic006G052300 Sobic006G210000--Sobic006G052300 Sobic005G191900 Sobic005G191900 Sobic006G210000--Sobic005G191900
Octagon: transcription factors


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