Gene annotation
Transcriptome id Sobic.004G232000.1
Synonym Sb04g027570
Functional annotation TLD family protein, putative, expressed
UniProt C5XYN2
Pfam PF07534
Panther DB PTHR23354 PTHR23354:SF76
NCBI CDD KOG2372; Oxidation resistance protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G39870 : TLD-domain containing nucleolar protein
RAP-DB (Rice) LOC_Os02g51770.1 : TLD family protein, putative, expressed
MaizeGDB (Corn) Zm00025a033163
Brachypodium KQK01844 , PNT69607 , PNT69608
Barley HORVU6Hr1G074360.18 , HORVU6Hr1G074360.19 , HORVU6Hr1G074360.14 , HORVU6Hr1G074360.15 , HORVU6Hr1G074360.16 , HORVU6Hr1G074360.17 , HORVU6Hr1G074360.10 , HORVU6Hr1G074360.11 , HORVU6Hr1G074360.12 , HORVU6Hr1G074360.13 , HORVU6Hr1G074360.20 , HORVU6Hr1G074360.6 , HORVU6Hr1G074360.7 , HORVU6Hr1G074360.4 , HORVU6Hr1G074360.5 , HORVU6Hr1G074360.2 , HORVU6Hr1G074360.3 , HORVU6Hr1G074360.1 , HORVU6Hr1G074360.8 , HORVU6Hr1G074360.9
Wheat TraesCS6A02G300200 , TraesCS6A02G300200 , TraesCS6B02G329900 , TraesCS6D02G280100 , TraesCS6B02G329900
Populus -


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cDNA sequences
Sobic.004G232000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G087100 far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome C, putative, expressed -
2 Sobic.007G043900 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
3 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
4 Sobic.002G076000 transporter-related, putative, expressed -
5 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
6 Sobic.005G084100 Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(PubMedID : 31721651)@inactive receptor kinase At1g27190 precursor, putative, expressed -
7 Sobic.001G043400 expressed protein -
8 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
9 Sobic.005G009200 expressed protein -
10 Sobic.007G188900 AP2 domain containing protein, expressed -
11 Sobic.006G056000 OsFBL16 - F-box domain and LRR containing protein, expressed -
12 Sobic.009G015800 expressed protein -
13 Sobic.004G069100 OsFBD6 - F-box and FBD domain containing protein, expressed -
14 Sobic.010G166000 ESP1, putative, expressed -
15 Sobic.007G000800 expressed protein -
16 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
17 Sobic.010G268300 protein phosphatase 2C, putative, expressed -
18 Sobic.005G015100 OsFBX291 - F-box domain containing protein, expressed -
19 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
20 Sobic.002G288000 bromodomain domain containing protein, expressed K11723: bromodomain-containing protein 7


Gene co-expression network
sample Sobic004G232000 Sobic004G232000 Sobic001G087100 Sobic001G087100 Sobic004G232000--Sobic001G087100 Sobic007G043900 Sobic007G043900 Sobic004G232000--Sobic007G043900 Sobic009G030300 Sobic009G030300 Sobic004G232000--Sobic009G030300 Sobic002G076000 Sobic002G076000 Sobic004G232000--Sobic002G076000 Sobic002G259800 Sobic002G259800 Sobic004G232000--Sobic002G259800 Sobic005G084100 Sobic005G084100 Sobic004G232000--Sobic005G084100 Sobic001G043400 Sobic001G043400 Sobic004G232000--Sobic001G043400 Sobic009G040800 Sobic009G040800 Sobic004G232000--Sobic009G040800 Sobic005G009200 Sobic005G009200 Sobic004G232000--Sobic005G009200 Sobic001G087100--Sobic001G043400 Sobic001G087100--Sobic004G232000 Sobic005G015100 Sobic005G015100 Sobic001G087100--Sobic005G015100 Sobic003G174800 Sobic003G174800 Sobic001G087100--Sobic003G174800 Sobic009G015800 Sobic009G015800 Sobic001G087100--Sobic009G015800 Sobic001G087100--Sobic002G076000 Sobic001G087100--Sobic007G043900 Sobic009G225200 Sobic009G225200 Sobic001G087100--Sobic009G225200 Sobic010G166000 Sobic010G166000 Sobic001G087100--Sobic010G166000 Sobic007G043900--Sobic004G232000 Sobic004G096500 Sobic004G096500 Sobic007G043900--Sobic004G096500 Sobic006G056000 Sobic006G056000 Sobic007G043900--Sobic006G056000 Sobic006G052300 Sobic006G052300 Sobic007G043900--Sobic006G052300 Sobic009G100050 Sobic009G100050 Sobic007G043900--Sobic009G100050 Sobic002G010800 Sobic002G010800 Sobic007G043900--Sobic002G010800 Sobic009G096100 Sobic009G096100 Sobic007G043900--Sobic009G096100 Sobic007G043900--Sobic001G087100 Sobic004G087600 Sobic004G087600 Sobic007G043900--Sobic004G087600 Sobic002G177400 Sobic002G177400 Sobic009G030300--Sobic002G177400 Sobic001G226000 Sobic001G226000 Sobic009G030300--Sobic001G226000 Sobic004G061900 Sobic004G061900 Sobic009G030300--Sobic004G061900 Sobic009G044900 Sobic009G044900 Sobic009G030300--Sobic009G044900 Sobic004G013600 Sobic004G013600 Sobic009G030300--Sobic004G013600 Sobic004G088400 Sobic004G088400 Sobic009G030300--Sobic004G088400 Sobic008G117200 Sobic008G117200 Sobic009G030300--Sobic008G117200 Sobic002G334600 Sobic002G334600 Sobic009G030300--Sobic002G334600 Sobic008G129700 Sobic008G129700 Sobic009G030300--Sobic008G129700 Sobic002G076000--Sobic006G056000 Sobic002G076000--Sobic005G084100 Sobic003G353600 Sobic003G353600 Sobic002G076000--Sobic003G353600 Sobic003G070100 Sobic003G070100 Sobic002G076000--Sobic003G070100 Sobic002G076000--Sobic009G100050 Sobic002G076000--Sobic004G232000 Sobic004G325400 Sobic004G325400 Sobic002G076000--Sobic004G325400 Sobic009G213100 Sobic009G213100 Sobic002G076000--Sobic009G213100 Sobic010G083000 Sobic010G083000 Sobic002G076000--Sobic010G083000 Sobic009G195200 Sobic009G195200 Sobic002G259800--Sobic009G195200 Sobic001G306900 Sobic001G306900 Sobic002G259800--Sobic001G306900 Sobic005G015900 Sobic005G015900 Sobic002G259800--Sobic005G015900 Sobic003G394300 Sobic003G394300 Sobic002G259800--Sobic003G394300 Sobic006G248500 Sobic006G248500 Sobic002G259800--Sobic006G248500 Sobic001G246500 Sobic001G246500 Sobic002G259800--Sobic001G246500 Sobic002G259800--Sobic005G084100 Sobic002G423200 Sobic002G423200 Sobic002G259800--Sobic002G423200 Sobic004G156500 Sobic004G156500 Sobic002G259800--Sobic004G156500 Sobic008G083000 Sobic008G083000 Sobic005G084100--Sobic008G083000 Sobic005G084100--Sobic002G259800 Sobic001G360900 Sobic001G360900 Sobic005G084100--Sobic001G360900 Sobic010G279700 Sobic010G279700 Sobic005G084100--Sobic010G279700 Sobic005G084100--Sobic002G076000 Sobic001G094000 Sobic001G094000 Sobic005G084100--Sobic001G094000 Sobic002G090800 Sobic002G090800 Sobic005G084100--Sobic002G090800 Sobic008G131000 Sobic008G131000 Sobic005G084100--Sobic008G131000 Sobic005G084100--Sobic006G056000 Sobic001G043400--Sobic001G087100 Sobic001G043400--Sobic004G232000 Sobic005G025300 Sobic005G025300 Sobic001G043400--Sobic005G025300 Sobic001G043400--Sobic010G166000 Sobic001G043400--Sobic004G096500 Sobic007G216700 Sobic007G216700 Sobic001G043400--Sobic007G216700 Sobic004G219100 Sobic004G219100 Sobic001G043400--Sobic004G219100 Sobic004G018300 Sobic004G018300 Sobic001G043400--Sobic004G018300 Sobic010G268300 Sobic010G268300 Sobic001G043400--Sobic010G268300 Sobic010G278600 Sobic010G278600 Sobic009G040800--Sobic010G278600 Sobic006G091000 Sobic006G091000 Sobic009G040800--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic009G040800--Sobic005G040900 Sobic009G129600 Sobic009G129600 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic004G246100 Sobic004G246100 Sobic009G040800--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic009G040800--Sobic001G042200 Sobic004G353400 Sobic004G353400 Sobic009G040800--Sobic004G353400 Sobic002G362300 Sobic002G362300 Sobic005G009200--Sobic002G362300 Sobic003G442000 Sobic003G442000 Sobic005G009200--Sobic003G442000 Sobic001G371000 Sobic001G371000 Sobic005G009200--Sobic001G371000 Sobic005G009200--Sobic008G129700 Sobic005G009200--Sobic008G117200 Sobic009G151200 Sobic009G151200 Sobic005G009200--Sobic009G151200 Sobic005G009200--Sobic002G259800 Sobic002G421700 Sobic002G421700 Sobic005G009200--Sobic002G421700 Sobic008G034600 Sobic008G034600 Sobic005G009200--Sobic008G034600
Octagon: transcription factors


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