Gene annotation
Transcriptome id Sobic.001G087100.2,Sobic.001G087100.1
Synonym Sb01g007850, PHYC, PHYC, phytochrome
Functional annotation far-red light perception and signal transduction (PubMedID : 14963106)
phytochrome C, putative, expressed
UniProt A0A1Z5S4Y5 , Q6S4Q6 , Q6S4R1 , Q6S4Q9 , P93528
Pfam PF02518 PF00512 PF01590 PF08446 PF00989 PF00360 PF00512 PF01590 PF08446 PF00989 PF00360
Panther DB PTHR24423 PTHR24423:SF493
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007165; signal transduction GO:0000155phosphorelay sensor kinase activity GO:0005515protein binding GO:0006355regulation of transcription, DNA-templated GO:0018298protein-chromophore linkage GO:0009584detection of visible light


Orthologs (automatic annotation)
TAIR AT5G35840 : phytochrome C
RAP-DB (Rice) LOC_Os03g54084.1 : phytochrome C, putative, expressed
MaizeGDB (Corn) Zm00025a016790 , Zm00025a033755 , Zm00025a008184
Brachypodium KQK13173 , KQK13172
Barley HORVU5Hr1G095530.4 , HORVU5Hr1G095530.1 , HORVU5Hr1G095530.3 , HORVU5Hr1G095530.2
Wheat TraesCS5B02G396200 , TraesCS5D02G401000 , TraesCS5D02G401000 , TraesCS5D02G401000 , TraesCS5A02G391300 , TraesCS5A02G391300
Populus -


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cDNA sequences
Sobic.001G087100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G043400 expressed protein -
2 Sobic.004G232000 TLD family protein, putative, expressed -
3 Sobic.005G015100 OsFBX291 - F-box domain containing protein, expressed -
4 Sobic.003G174800 - -
5 Sobic.009G015800 expressed protein -
6 Sobic.002G076000 transporter-related, putative, expressed -
7 Sobic.007G043900 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
8 Sobic.009G225200 expressed protein -
9 Sobic.010G166000 ESP1, putative, expressed -
10 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
11 Sobic.006G228700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_CrRLK1L-1.3 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
12 Sobic.009G004700 stripe rust resistance protein Yr10, putative, expressed -
13 Sobic.009G078500 GDSL-like lipase/acylhydrolase, putative, expressed -
14 Sobic.008G081600 expressed protein -
15 Sobic.001G191100 OsFBX157 - F-box domain containing protein, expressed -
16 Sobic.009G109450 - -
17 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
18 Sobic.009G045700 E3 ubiquitin-protein ligase SINA-like, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
19 Sobic.005G046500 protein kinase family protein, putative, expressed -
20 Sobic.004G199600 DUF581 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G087100 Sobic001G087100 Sobic001G043400 Sobic001G043400 Sobic001G087100--Sobic001G043400 Sobic004G232000 Sobic004G232000 Sobic001G087100--Sobic004G232000 Sobic005G015100 Sobic005G015100 Sobic001G087100--Sobic005G015100 Sobic003G174800 Sobic003G174800 Sobic001G087100--Sobic003G174800 Sobic009G015800 Sobic009G015800 Sobic001G087100--Sobic009G015800 Sobic002G076000 Sobic002G076000 Sobic001G087100--Sobic002G076000 Sobic007G043900 Sobic007G043900 Sobic001G087100--Sobic007G043900 Sobic009G225200 Sobic009G225200 Sobic001G087100--Sobic009G225200 Sobic010G166000 Sobic010G166000 Sobic001G087100--Sobic010G166000 Sobic001G043400--Sobic001G087100 Sobic001G043400--Sobic004G232000 Sobic005G025300 Sobic005G025300 Sobic001G043400--Sobic005G025300 Sobic001G043400--Sobic010G166000 Sobic004G096500 Sobic004G096500 Sobic001G043400--Sobic004G096500 Sobic007G216700 Sobic007G216700 Sobic001G043400--Sobic007G216700 Sobic004G219100 Sobic004G219100 Sobic001G043400--Sobic004G219100 Sobic004G018300 Sobic004G018300 Sobic001G043400--Sobic004G018300 Sobic010G268300 Sobic010G268300 Sobic001G043400--Sobic010G268300 Sobic004G232000--Sobic001G087100 Sobic004G232000--Sobic007G043900 Sobic009G030300 Sobic009G030300 Sobic004G232000--Sobic009G030300 Sobic004G232000--Sobic002G076000 Sobic002G259800 Sobic002G259800 Sobic004G232000--Sobic002G259800 Sobic005G084100 Sobic005G084100 Sobic004G232000--Sobic005G084100 Sobic004G232000--Sobic001G043400 Sobic009G040800 Sobic009G040800 Sobic004G232000--Sobic009G040800 Sobic005G009200 Sobic005G009200 Sobic004G232000--Sobic005G009200 Sobic002G051450 Sobic002G051450 Sobic005G015100--Sobic002G051450 Sobic008G034600 Sobic008G034600 Sobic005G015100--Sobic008G034600 Sobic002G158700 Sobic002G158700 Sobic005G015100--Sobic002G158700 Sobic001G464200 Sobic001G464200 Sobic005G015100--Sobic001G464200 Sobic006G128900 Sobic006G128900 Sobic005G015100--Sobic006G128900 Sobic006G145000 Sobic006G145000 Sobic005G015100--Sobic006G145000 Sobic002G421700 Sobic002G421700 Sobic005G015100--Sobic002G421700 Sobic004G271900 Sobic004G271900 Sobic005G015100--Sobic004G271900 Sobic004G256600 Sobic004G256600 Sobic005G015100--Sobic004G256600 Sobic008G000900 Sobic008G000900 Sobic003G174800--Sobic008G000900 Sobic003G174800--Sobic001G087100 Sobic006G214400 Sobic006G214400 Sobic003G174800--Sobic006G214400 Sobic010G143200 Sobic010G143200 Sobic003G174800--Sobic010G143200 Sobic003G174800--Sobic007G043900 Sobic004G175600 Sobic004G175600 Sobic003G174800--Sobic004G175600 Sobic001G485600 Sobic001G485600 Sobic003G174800--Sobic001G485600 Sobic003G174800--Sobic001G043400 Sobic003G174800--Sobic010G268300 Sobic009G015800--Sobic005G015100 Sobic009G015800--Sobic009G225200 Sobic009G015800--Sobic002G259800 Sobic009G015800--Sobic002G158700 Sobic009G015800--Sobic002G421700 Sobic009G015800--Sobic001G087100 Sobic009G015800--Sobic004G232000 Sobic005G015900 Sobic005G015900 Sobic009G015800--Sobic005G015900 Sobic001G315100 Sobic001G315100 Sobic009G015800--Sobic001G315100 Sobic006G056000 Sobic006G056000 Sobic002G076000--Sobic006G056000 Sobic002G076000--Sobic005G084100 Sobic003G353600 Sobic003G353600 Sobic002G076000--Sobic003G353600 Sobic003G070100 Sobic003G070100 Sobic002G076000--Sobic003G070100 Sobic009G100050 Sobic009G100050 Sobic002G076000--Sobic009G100050 Sobic002G076000--Sobic004G232000 Sobic004G325400 Sobic004G325400 Sobic002G076000--Sobic004G325400 Sobic009G213100 Sobic009G213100 Sobic002G076000--Sobic009G213100 Sobic010G083000 Sobic010G083000 Sobic002G076000--Sobic010G083000 Sobic007G043900--Sobic004G232000 Sobic007G043900--Sobic004G096500 Sobic007G043900--Sobic006G056000 Sobic006G052300 Sobic006G052300 Sobic007G043900--Sobic006G052300 Sobic007G043900--Sobic009G100050 Sobic002G010800 Sobic002G010800 Sobic007G043900--Sobic002G010800 Sobic009G096100 Sobic009G096100 Sobic007G043900--Sobic009G096100 Sobic007G043900--Sobic001G087100 Sobic004G087600 Sobic004G087600 Sobic007G043900--Sobic004G087600 Sobic009G117300 Sobic009G117300 Sobic009G225200--Sobic009G117300 Sobic009G117400 Sobic009G117400 Sobic009G225200--Sobic009G117400 Sobic009G225200--Sobic005G015100 Sobic001G043900 Sobic001G043900 Sobic009G225200--Sobic001G043900 Sobic003G258900 Sobic003G258900 Sobic009G225200--Sobic003G258900 Sobic009G225200--Sobic004G271900 Sobic004G348100 Sobic004G348100 Sobic009G225200--Sobic004G348100 Sobic003G442000 Sobic003G442000 Sobic009G225200--Sobic003G442000 Sobic009G225200--Sobic009G015800 Sobic010G166000--Sobic002G158700 Sobic008G149800 Sobic008G149800 Sobic010G166000--Sobic008G149800 Sobic001G296500 Sobic001G296500 Sobic010G166000--Sobic001G296500 Sobic003G401000 Sobic003G401000 Sobic010G166000--Sobic003G401000 Sobic008G011100 Sobic008G011100 Sobic010G166000--Sobic008G011100 Sobic010G166000--Sobic004G219100 Sobic010G166000--Sobic009G100050 Sobic006G165000 Sobic006G165000 Sobic010G166000--Sobic006G165000 Sobic010G166000--Sobic005G015100
Octagon: transcription factors


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