Gene annotation
Transcriptome id Sobic.001G043400.1
Synonym Sb01g004000
Functional annotation expressed protein
UniProt C5WW19
Pfam PF04842
Panther DB PTHR31860 PTHR31860:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G48840 : Plant protein of unknown function (DUF639)
RAP-DB (Rice) LOC_Os10g03830.1 : expressed protein
MaizeGDB (Corn) Zm00025a008707
Brachypodium KQJ94492 , KQJ94493
Barley -
Wheat TraesCS6D02G184200 , TraesCS6B02G220600 , TraesCS6A02G204000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G043400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G087100 far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome C, putative, expressed -
2 Sobic.004G232000 TLD family protein, putative, expressed -
3 Sobic.005G025300 dehydrogenase-phosphopantetheinyltransferase, putative, expressed K06133: LYS5, 4'-phosphopantetheinyl transferase
4 Sobic.010G166000 ESP1, putative, expressed -
5 Sobic.004G096500 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
6 Sobic.007G216700 peptidyl-prolyl cis-trans isomerase, putative, expressed -
7 Sobic.004G219100 phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative, expressed K03859: PIGC, phosphatidylinositol N-acetylglucosaminyltransferase subunit C
8 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
9 Sobic.010G268300 protein phosphatase 2C, putative, expressed -
10 Sobic.003G174800 - -
11 Sobic.001G191100 OsFBX157 - F-box domain containing protein, expressed -
12 Sobic.004G246700 zinc finger family protein, putative, expressed -
13 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
14 Sobic.007G061700 vacuolar protein sorting-associated protein 18, putative, expressed -
15 Sobic.006G153900 transporter, major facilitator family, putative, expressed -
16 Sobic.008G166300 RING finger protein 13, putative, expressed K15692: RNF13, E3 ubiquitin-protein ligase RNF13
17 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
18 Sobic.007G043900 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
19 Sobic.006G078600 expressed protein K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
20 Sobic.009G126600 cyclin-dependent kinase D-1, putative, expressed K02202: cyclin-dependent kinase 7


Gene co-expression network
sample Sobic001G043400 Sobic001G043400 Sobic001G087100 Sobic001G087100 Sobic001G043400--Sobic001G087100 Sobic004G232000 Sobic004G232000 Sobic001G043400--Sobic004G232000 Sobic005G025300 Sobic005G025300 Sobic001G043400--Sobic005G025300 Sobic010G166000 Sobic010G166000 Sobic001G043400--Sobic010G166000 Sobic004G096500 Sobic004G096500 Sobic001G043400--Sobic004G096500 Sobic007G216700 Sobic007G216700 Sobic001G043400--Sobic007G216700 Sobic004G219100 Sobic004G219100 Sobic001G043400--Sobic004G219100 Sobic004G018300 Sobic004G018300 Sobic001G043400--Sobic004G018300 Sobic010G268300 Sobic010G268300 Sobic001G043400--Sobic010G268300 Sobic001G087100--Sobic001G043400 Sobic001G087100--Sobic004G232000 Sobic005G015100 Sobic005G015100 Sobic001G087100--Sobic005G015100 Sobic003G174800 Sobic003G174800 Sobic001G087100--Sobic003G174800 Sobic009G015800 Sobic009G015800 Sobic001G087100--Sobic009G015800 Sobic002G076000 Sobic002G076000 Sobic001G087100--Sobic002G076000 Sobic007G043900 Sobic007G043900 Sobic001G087100--Sobic007G043900 Sobic009G225200 Sobic009G225200 Sobic001G087100--Sobic009G225200 Sobic001G087100--Sobic010G166000 Sobic004G232000--Sobic001G087100 Sobic004G232000--Sobic007G043900 Sobic009G030300 Sobic009G030300 Sobic004G232000--Sobic009G030300 Sobic004G232000--Sobic002G076000 Sobic002G259800 Sobic002G259800 Sobic004G232000--Sobic002G259800 Sobic005G084100 Sobic005G084100 Sobic004G232000--Sobic005G084100 Sobic004G232000--Sobic001G043400 Sobic009G040800 Sobic009G040800 Sobic004G232000--Sobic009G040800 Sobic005G009200 Sobic005G009200 Sobic004G232000--Sobic005G009200 Sobic005G025300--Sobic001G043400 Sobic001G294100 Sobic001G294100 Sobic005G025300--Sobic001G294100 Sobic010G278600 Sobic010G278600 Sobic005G025300--Sobic010G278600 Sobic001G373400 Sobic001G373400 Sobic005G025300--Sobic001G373400 Sobic010G055800 Sobic010G055800 Sobic005G025300--Sobic010G055800 Sobic002G227200 Sobic002G227200 Sobic005G025300--Sobic002G227200 Sobic003G368800 Sobic003G368800 Sobic005G025300--Sobic003G368800 Sobic004G236800 Sobic004G236800 Sobic005G025300--Sobic004G236800 Sobic006G078600 Sobic006G078600 Sobic005G025300--Sobic006G078600 Sobic002G158700 Sobic002G158700 Sobic010G166000--Sobic002G158700 Sobic008G149800 Sobic008G149800 Sobic010G166000--Sobic008G149800 Sobic001G296500 Sobic001G296500 Sobic010G166000--Sobic001G296500 Sobic003G401000 Sobic003G401000 Sobic010G166000--Sobic003G401000 Sobic008G011100 Sobic008G011100 Sobic010G166000--Sobic008G011100 Sobic010G166000--Sobic004G219100 Sobic009G100050 Sobic009G100050 Sobic010G166000--Sobic009G100050 Sobic006G165000 Sobic006G165000 Sobic010G166000--Sobic006G165000 Sobic010G166000--Sobic005G015100 Sobic007G011600 Sobic007G011600 Sobic004G096500--Sobic007G011600 Sobic001G303675 Sobic001G303675 Sobic004G096500--Sobic001G303675 Sobic006G222300 Sobic006G222300 Sobic004G096500--Sobic006G222300 Sobic006G052300 Sobic006G052300 Sobic004G096500--Sobic006G052300 Sobic004G096500--Sobic008G011100 Sobic004G096500--Sobic002G259800 Sobic001G306900 Sobic001G306900 Sobic004G096500--Sobic001G306900 Sobic005G079800 Sobic005G079800 Sobic004G096500--Sobic005G079800 Sobic001G261496 Sobic001G261496 Sobic004G096500--Sobic001G261496 Sobic007G216700--Sobic001G043400 Sobic007G216700--Sobic001G261496 Sobic002G009401 Sobic002G009401 Sobic007G216700--Sobic002G009401 Sobic007G216700--Sobic002G227200 Sobic007G216700--Sobic005G025300 Sobic001G284800 Sobic001G284800 Sobic007G216700--Sobic001G284800 Sobic008G125600 Sobic008G125600 Sobic007G216700--Sobic008G125600 Sobic003G088700 Sobic003G088700 Sobic007G216700--Sobic003G088700 Sobic008G000900 Sobic008G000900 Sobic007G216700--Sobic008G000900 Sobic005G015900 Sobic005G015900 Sobic004G219100--Sobic005G015900 Sobic001G407200 Sobic001G407200 Sobic004G219100--Sobic001G407200 Sobic005G013200 Sobic005G013200 Sobic004G219100--Sobic005G013200 Sobic002G320500 Sobic002G320500 Sobic004G219100--Sobic002G320500 Sobic004G219100--Sobic002G158700 Sobic010G129200 Sobic010G129200 Sobic004G219100--Sobic010G129200 Sobic006G032400 Sobic006G032400 Sobic004G219100--Sobic006G032400 Sobic004G219100--Sobic008G149800 Sobic004G219100--Sobic001G303675 Sobic004G087600 Sobic004G087600 Sobic004G018300--Sobic004G087600 Sobic001G167200 Sobic001G167200 Sobic004G018300--Sobic001G167200 Sobic004G018300--Sobic008G011100 Sobic004G018300--Sobic002G158700 Sobic002G396000 Sobic002G396000 Sobic004G018300--Sobic002G396000 Sobic001G081000 Sobic001G081000 Sobic004G018300--Sobic001G081000 Sobic008G083000 Sobic008G083000 Sobic004G018300--Sobic008G083000 Sobic009G126400 Sobic009G126400 Sobic004G018300--Sobic009G126400 Sobic004G223600 Sobic004G223600 Sobic004G018300--Sobic004G223600 Sobic001G281600 Sobic001G281600 Sobic010G268300--Sobic001G281600 Sobic002G122600 Sobic002G122600 Sobic010G268300--Sobic002G122600 Sobic008G136200 Sobic008G136200 Sobic010G268300--Sobic008G136200 Sobic003G401100 Sobic003G401100 Sobic010G268300--Sobic003G401100 Sobic009G215800 Sobic009G215800 Sobic010G268300--Sobic009G215800 Sobic004G246700 Sobic004G246700 Sobic010G268300--Sobic004G246700 Sobic004G021200 Sobic004G021200 Sobic010G268300--Sobic004G021200 Sobic007G009400 Sobic007G009400 Sobic010G268300--Sobic007G009400 Sobic010G279700 Sobic010G279700 Sobic010G268300--Sobic010G279700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.