Gene annotation
Transcriptome id Sobic.007G043900.1,Sobic.007G043900.2
Synonym Sb07g003670, IMP4
Functional annotation Brix domain containing protein, putative, expressed
UniProt A0A1Z5R8Z4 , C5YGY8
Pfam PF04427
Panther DB PTHR22734 PTHR22734:SF2
NCBI CDD KOG2781; U3 small nucleolar ribonucleoprotein (snoRNP) component
KEGG Orthology K14561; U3 small nucleolar ribonucleoprotein protein IMP4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G63780 : Ribosomal RNA processing Brix domain protein
RAP-DB (Rice) LOC_Os08g05880.1 : Brix domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a018326
Brachypodium KQJ95349
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G232000 TLD family protein, putative, expressed -
2 Sobic.004G096500 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
3 Sobic.006G056000 OsFBL16 - F-box domain and LRR containing protein, expressed -
4 Sobic.006G052300 dnaJ domain containing protein, expressed -
5 Sobic.009G100050 - -
6 Sobic.002G010800 NBS-LRR disease resistance protein, putative, expressed K13457: RPM1, disease resistance protein RPM1
7 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
8 Sobic.001G087100 far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome C, putative, expressed -
9 Sobic.004G087600 RNA recognition motif containing protein, putative, expressed -
10 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
11 Sobic.001G138400 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
12 Sobic.001G360900 peptidyl-prolyl isomerase PASTICCINO1, putative, expressed -
13 Sobic.007G056700 AP2/EREBP transcription factor BABY BOOM, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
14 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
15 Sobic.002G076000 transporter-related, putative, expressed -
16 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
17 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
18 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
19 Sobic.005G015100 OsFBX291 - F-box domain containing protein, expressed -
20 Sobic.001G029400 RNA-binding motif protein, putative, expressed K13107: RBMX2, RNA-binding motif protein, X-linked 2


Gene co-expression network
sample Sobic007G043900 Sobic007G043900 Sobic004G232000 Sobic004G232000 Sobic007G043900--Sobic004G232000 Sobic004G096500 Sobic004G096500 Sobic007G043900--Sobic004G096500 Sobic006G056000 Sobic006G056000 Sobic007G043900--Sobic006G056000 Sobic006G052300 Sobic006G052300 Sobic007G043900--Sobic006G052300 Sobic009G100050 Sobic009G100050 Sobic007G043900--Sobic009G100050 Sobic002G010800 Sobic002G010800 Sobic007G043900--Sobic002G010800 Sobic009G096100 Sobic009G096100 Sobic007G043900--Sobic009G096100 Sobic001G087100 Sobic001G087100 Sobic007G043900--Sobic001G087100 Sobic004G087600 Sobic004G087600 Sobic007G043900--Sobic004G087600 Sobic004G232000--Sobic001G087100 Sobic004G232000--Sobic007G043900 Sobic009G030300 Sobic009G030300 Sobic004G232000--Sobic009G030300 Sobic002G076000 Sobic002G076000 Sobic004G232000--Sobic002G076000 Sobic002G259800 Sobic002G259800 Sobic004G232000--Sobic002G259800 Sobic005G084100 Sobic005G084100 Sobic004G232000--Sobic005G084100 Sobic001G043400 Sobic001G043400 Sobic004G232000--Sobic001G043400 Sobic009G040800 Sobic009G040800 Sobic004G232000--Sobic009G040800 Sobic005G009200 Sobic005G009200 Sobic004G232000--Sobic005G009200 Sobic007G011600 Sobic007G011600 Sobic004G096500--Sobic007G011600 Sobic001G303675 Sobic001G303675 Sobic004G096500--Sobic001G303675 Sobic006G222300 Sobic006G222300 Sobic004G096500--Sobic006G222300 Sobic004G096500--Sobic006G052300 Sobic008G011100 Sobic008G011100 Sobic004G096500--Sobic008G011100 Sobic004G096500--Sobic002G259800 Sobic001G306900 Sobic001G306900 Sobic004G096500--Sobic001G306900 Sobic005G079800 Sobic005G079800 Sobic004G096500--Sobic005G079800 Sobic001G261496 Sobic001G261496 Sobic004G096500--Sobic001G261496 Sobic003G353600 Sobic003G353600 Sobic006G056000--Sobic003G353600 Sobic006G056000--Sobic002G076000 Sobic006G056000--Sobic005G084100 Sobic004G111000 Sobic004G111000 Sobic006G056000--Sobic004G111000 Sobic002G079100 Sobic002G079100 Sobic006G056000--Sobic002G079100 Sobic001G138400 Sobic001G138400 Sobic006G056000--Sobic001G138400 Sobic004G285000 Sobic004G285000 Sobic006G056000--Sobic004G285000 Sobic006G047100 Sobic006G047100 Sobic006G056000--Sobic006G047100 Sobic006G210000 Sobic006G210000 Sobic006G056000--Sobic006G210000 Sobic004G264300 Sobic004G264300 Sobic006G052300--Sobic004G264300 Sobic004G009600 Sobic004G009600 Sobic006G052300--Sobic004G009600 Sobic006G220000 Sobic006G220000 Sobic006G052300--Sobic006G220000 Sobic007G054400 Sobic007G054400 Sobic006G052300--Sobic007G054400 Sobic006G052300--Sobic004G096500 Sobic006G052300--Sobic006G210000 Sobic004G145500 Sobic004G145500 Sobic006G052300--Sobic004G145500 Sobic008G100100 Sobic008G100100 Sobic006G052300--Sobic008G100100 Sobic010G277500 Sobic010G277500 Sobic006G052300--Sobic010G277500 Sobic009G100050--Sobic001G303675 Sobic003G070100 Sobic003G070100 Sobic009G100050--Sobic003G070100 Sobic001G094000 Sobic001G094000 Sobic009G100050--Sobic001G094000 Sobic010G166000 Sobic010G166000 Sobic009G100050--Sobic010G166000 Sobic006G145000 Sobic006G145000 Sobic009G100050--Sobic006G145000 Sobic002G144966 Sobic002G144966 Sobic009G100050--Sobic002G144966 Sobic009G100050--Sobic004G096500 Sobic010G136600 Sobic010G136600 Sobic009G100050--Sobic010G136600 Sobic001G454301 Sobic001G454301 Sobic009G100050--Sobic001G454301 Sobic002G010800--Sobic005G084100 Sobic002G423200 Sobic002G423200 Sobic002G010800--Sobic002G423200 Sobic002G049000 Sobic002G049000 Sobic002G010800--Sobic002G049000 Sobic002G010800--Sobic001G303675 Sobic002G010800--Sobic001G094000 Sobic002G010800--Sobic006G052300 Sobic002G010800--Sobic007G043900 Sobic002G010800--Sobic002G076000 Sobic002G010800--Sobic006G056000 Sobic008G056900 Sobic008G056900 Sobic009G096100--Sobic008G056900 Sobic002G192500 Sobic002G192500 Sobic009G096100--Sobic002G192500 Sobic010G157700 Sobic010G157700 Sobic009G096100--Sobic010G157700 Sobic001G485600 Sobic001G485600 Sobic009G096100--Sobic001G485600 Sobic009G096100--Sobic006G056000 Sobic009G096100--Sobic007G043900 Sobic002G344500 Sobic002G344500 Sobic009G096100--Sobic002G344500 Sobic002G380100 Sobic002G380100 Sobic009G096100--Sobic002G380100 Sobic007G077700 Sobic007G077700 Sobic009G096100--Sobic007G077700 Sobic001G087100--Sobic001G043400 Sobic001G087100--Sobic004G232000 Sobic005G015100 Sobic005G015100 Sobic001G087100--Sobic005G015100 Sobic003G174800 Sobic003G174800 Sobic001G087100--Sobic003G174800 Sobic009G015800 Sobic009G015800 Sobic001G087100--Sobic009G015800 Sobic001G087100--Sobic002G076000 Sobic001G087100--Sobic007G043900 Sobic009G225200 Sobic009G225200 Sobic001G087100--Sobic009G225200 Sobic001G087100--Sobic010G166000 Sobic004G087600--Sobic008G011100 Sobic004G018300 Sobic004G018300 Sobic004G087600--Sobic004G018300 Sobic005G106500 Sobic005G106500 Sobic004G087600--Sobic005G106500 Sobic002G031400 Sobic002G031400 Sobic004G087600--Sobic002G031400 Sobic002G309800 Sobic002G309800 Sobic004G087600--Sobic002G309800 Sobic003G133900 Sobic003G133900 Sobic004G087600--Sobic003G133900 Sobic001G281600 Sobic001G281600 Sobic004G087600--Sobic001G281600 Sobic001G124000 Sobic001G124000 Sobic004G087600--Sobic001G124000 Sobic001G360900 Sobic001G360900 Sobic004G087600--Sobic001G360900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.