Gene annotation
Transcriptome id Sobic.001G029400.1
Synonym Sb01g002770
Functional annotation RNA-binding motif protein, putative, expressed
UniProt C5WU44
Pfam PF00642 PF00076
Panther DB PTHR23139
NCBI CDD KOG0126; Predicted RNA-binding protein (RRM superfamily)
KEGG Orthology K13107; RBMX2, RNA-binding motif protein, X-linked 2
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G47120 : RNA recognition motif (RRM)-containing protein
RAP-DB (Rice) LOC_Os03g61110.1 : RNA-binding motif protein, putative, expressed
MaizeGDB (Corn) Zm00025a008869
Brachypodium KQK12368
Barley HORVU5Hr1G115170.8 , HORVU5Hr1G115170.6 , HORVU5Hr1G115170.7 , HORVU5Hr1G115170.4 , HORVU5Hr1G115170.5 , HORVU5Hr1G115170.3 , HORVU5Hr1G115170.1
Wheat TraesCS2B02G168700 , TraesCS2D02G147300 , TraesCS5A02G488700 , TraesCS5B02G502600 , TraesCS2A02G143700 , TraesCS5D02G503700 , TraesCS5D02G503700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G224700 NFKB, putative, expressed -
2 Sobic.001G515100 ATP binding protein, putative, expressed K06883: uncharacterized protein
3 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
4 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
5 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
6 Sobic.010G028300 bromodomain domain containing protein, expressed -
7 Sobic.003G442000 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
8 Sobic.002G262700 RNA recognition motif containing protein, putative, expressed K13155: U11/U12 small nuclear ribonucleoprotein 35 kDa protein
9 Sobic.007G009400 bromodomain domain containing protein, expressed -
10 Sobic.002G277600 XAP5 family protein, putative, expressed K13119: FAM50, protein FAM50
11 Sobic.001G537800 SNF7 domain containing protein, putative, expressed K12193: VPS24, charged multivesicular body protein 3
12 Sobic.003G160000 SUMO protease, putative, expressed K08592: sentrin-specific protease 1
13 Sobic.007G027700 expressed protein -
14 Sobic.003G439800 growth inhibition and differentiation-related protein 88, putative, expressed -
15 Sobic.001G315100 TKL_IRAK_CrRLK1L-1.16 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
16 Sobic.001G138400 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
17 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
18 Sobic.007G043900 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
19 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
20 Sobic.004G283000 nucleic acid binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G029400 Sobic001G029400 Sobic002G224700 Sobic002G224700 Sobic001G029400--Sobic002G224700 Sobic001G515100 Sobic001G515100 Sobic001G029400--Sobic001G515100 Sobic003G401100 Sobic003G401100 Sobic001G029400--Sobic003G401100 Sobic007G111100 Sobic007G111100 Sobic001G029400--Sobic007G111100 Sobic001G143500 Sobic001G143500 Sobic001G029400--Sobic001G143500 Sobic010G028300 Sobic010G028300 Sobic001G029400--Sobic010G028300 Sobic003G442000 Sobic003G442000 Sobic001G029400--Sobic003G442000 Sobic002G262700 Sobic002G262700 Sobic001G029400--Sobic002G262700 Sobic007G009400 Sobic007G009400 Sobic001G029400--Sobic007G009400 Sobic006G248500 Sobic006G248500 Sobic002G224700--Sobic006G248500 Sobic008G127400 Sobic008G127400 Sobic002G224700--Sobic008G127400 Sobic007G027700 Sobic007G027700 Sobic002G224700--Sobic007G027700 Sobic002G224700--Sobic001G029400 Sobic004G246700 Sobic004G246700 Sobic002G224700--Sobic004G246700 Sobic002G224700--Sobic007G111100 Sobic002G058300 Sobic002G058300 Sobic002G224700--Sobic002G058300 Sobic002G224700--Sobic001G143500 Sobic006G065800 Sobic006G065800 Sobic002G224700--Sobic006G065800 Sobic001G515100--Sobic003G401100 Sobic006G077200 Sobic006G077200 Sobic001G515100--Sobic006G077200 Sobic003G184699 Sobic003G184699 Sobic001G515100--Sobic003G184699 Sobic001G515100--Sobic001G143500 Sobic001G515100--Sobic007G027700 Sobic007G075900 Sobic007G075900 Sobic001G515100--Sobic007G075900 Sobic002G370900 Sobic002G370900 Sobic001G515100--Sobic002G370900 Sobic005G216300 Sobic005G216300 Sobic001G515100--Sobic005G216300 Sobic001G176200 Sobic001G176200 Sobic001G515100--Sobic001G176200 Sobic010G236400 Sobic010G236400 Sobic003G401100--Sobic010G236400 Sobic004G084300 Sobic004G084300 Sobic003G401100--Sobic004G084300 Sobic001G281600 Sobic001G281600 Sobic003G401100--Sobic001G281600 Sobic003G081000 Sobic003G081000 Sobic003G401100--Sobic003G081000 Sobic003G401100--Sobic007G027700 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic004G274200 Sobic004G274200 Sobic003G401100--Sobic004G274200 Sobic003G241200 Sobic003G241200 Sobic003G401100--Sobic003G241200 Sobic010G202600 Sobic010G202600 Sobic007G111100--Sobic010G202600 Sobic007G111100--Sobic002G262700 Sobic006G267300 Sobic006G267300 Sobic007G111100--Sobic006G267300 Sobic007G111100--Sobic001G143500 Sobic001G390500 Sobic001G390500 Sobic007G111100--Sobic001G390500 Sobic004G283000 Sobic004G283000 Sobic007G111100--Sobic004G283000 Sobic004G068500 Sobic004G068500 Sobic007G111100--Sobic004G068500 Sobic001G131800 Sobic001G131800 Sobic007G111100--Sobic001G131800 Sobic003G205501 Sobic003G205501 Sobic007G111100--Sobic003G205501 Sobic006G252700 Sobic006G252700 Sobic001G143500--Sobic006G252700 Sobic001G143500--Sobic007G111100 Sobic002G313500 Sobic002G313500 Sobic001G143500--Sobic002G313500 Sobic004G350100 Sobic004G350100 Sobic001G143500--Sobic004G350100 Sobic001G143500--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic001G143500--Sobic003G439800 Sobic001G466700 Sobic001G466700 Sobic001G143500--Sobic001G466700 Sobic006G278700 Sobic006G278700 Sobic001G143500--Sobic006G278700 Sobic001G143500--Sobic006G267300 Sobic010G028300--Sobic003G401100 Sobic002G350300 Sobic002G350300 Sobic010G028300--Sobic002G350300 Sobic001G056200 Sobic001G056200 Sobic010G028300--Sobic001G056200 Sobic006G121300 Sobic006G121300 Sobic010G028300--Sobic006G121300 Sobic010G028300--Sobic001G131800 Sobic001G315100 Sobic001G315100 Sobic010G028300--Sobic001G315100 Sobic008G179700 Sobic008G179700 Sobic010G028300--Sobic008G179700 Sobic010G028300--Sobic003G081000 Sobic004G013600 Sobic004G013600 Sobic010G028300--Sobic004G013600 Sobic005G009200 Sobic005G009200 Sobic003G442000--Sobic005G009200 Sobic005G015900 Sobic005G015900 Sobic003G442000--Sobic005G015900 Sobic004G018300 Sobic004G018300 Sobic003G442000--Sobic004G018300 Sobic003G258900 Sobic003G258900 Sobic003G442000--Sobic003G258900 Sobic003G442000--Sobic010G202600 Sobic009G074700 Sobic009G074700 Sobic003G442000--Sobic009G074700 Sobic002G197100 Sobic002G197100 Sobic003G442000--Sobic002G197100 Sobic002G158700 Sobic002G158700 Sobic003G442000--Sobic002G158700 Sobic001G090400 Sobic001G090400 Sobic003G442000--Sobic001G090400 Sobic002G262700--Sobic007G111100 Sobic002G262700--Sobic010G202600 Sobic002G262700--Sobic009G074700 Sobic007G119200 Sobic007G119200 Sobic002G262700--Sobic007G119200 Sobic007G046200 Sobic007G046200 Sobic002G262700--Sobic007G046200 Sobic002G262700--Sobic004G068500 Sobic002G262700--Sobic008G127400 Sobic007G026000 Sobic007G026000 Sobic002G262700--Sobic007G026000 Sobic010G055800 Sobic010G055800 Sobic002G262700--Sobic010G055800 Sobic007G009400--Sobic003G241200 Sobic007G009400--Sobic003G401100 Sobic004G205600 Sobic004G205600 Sobic007G009400--Sobic004G205600 Sobic010G101800 Sobic010G101800 Sobic007G009400--Sobic010G101800 Sobic007G104800 Sobic007G104800 Sobic007G009400--Sobic007G104800 Sobic004G325400 Sobic004G325400 Sobic007G009400--Sobic004G325400 Sobic002G388200 Sobic002G388200 Sobic007G009400--Sobic002G388200 Sobic001G409600 Sobic001G409600 Sobic007G009400--Sobic001G409600 Sobic007G009400--Sobic003G081000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.