Gene annotation
Transcriptome id Sobic.001G537800.1
Synonym VPS24.1, Sb01g050050
Functional annotation SNF7 domain containing protein, putative, expressed
UniProt C5WMQ2
Pfam PF03357
Panther DB PTHR10476 PTHR10476:SF16
NCBI CDD KOG3229; Vacuolar sorting protein VPS24
KEGG Orthology K12193; VPS24, charged multivesicular body protein 3
Gene Ontology GO:0007034; vacuolar transport


Orthologs (automatic annotation)
TAIR AT5G22950 : SNF7 family protein
RAP-DB (Rice) LOC_Os03g01810.1 : SNF7 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000154 , Zm00025a048018
Brachypodium KQK16283 , KQK16282 , KQK20569
Barley HORVU4Hr1G090800.3 , HORVU4Hr1G090800.2 , HORVU4Hr1G090800.1
Wheat TraesCS5A02G548400 , TraesCS5D02G032400 , TraesCS4D02G358600 , TraesCS4D02G190000 , TraesCS4B02G382900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G029400 RNA-binding motif protein, putative, expressed K13107: RBMX2, RNA-binding motif protein, X-linked 2
2 Sobic.002G224700 NFKB, putative, expressed -
3 Sobic.003G185200 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
4 Sobic.003G045400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
5 Sobic.007G088900 expressed protein -
6 Sobic.001G467000 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
7 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
8 Sobic.001G335201 - -
9 Sobic.003G311000 histone-lysine N-methyltransferase SUVR3, putative, expressed -
10 Sobic.002G365100 RNA recognition motif containing protein, putative, expressed -
11 Sobic.003G205501 - -
12 Sobic.004G232000 TLD family protein, putative, expressed -
13 Sobic.006G128800 expressed protein -
14 Sobic.010G028300 bromodomain domain containing protein, expressed -
15 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
16 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
17 Sobic.009G056300 PHD finger protein, putative, expressed -
18 Sobic.003G437500 syntaxin 6, putative, expressed -
19 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
20 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55


Gene co-expression network
sample Sobic001G537800 Sobic001G537800 Sobic001G029400 Sobic001G029400 Sobic001G537800--Sobic001G029400 Sobic002G224700 Sobic002G224700 Sobic001G537800--Sobic002G224700 Sobic003G185200 Sobic003G185200 Sobic001G537800--Sobic003G185200 Sobic003G045400 Sobic003G045400 Sobic001G537800--Sobic003G045400 Sobic007G088900 Sobic007G088900 Sobic001G537800--Sobic007G088900 Sobic001G467000 Sobic001G467000 Sobic001G537800--Sobic001G467000 Sobic003G248500 Sobic003G248500 Sobic001G537800--Sobic003G248500 Sobic001G335201 Sobic001G335201 Sobic001G537800--Sobic001G335201 Sobic003G311000 Sobic003G311000 Sobic001G537800--Sobic003G311000 Sobic001G029400--Sobic002G224700 Sobic001G515100 Sobic001G515100 Sobic001G029400--Sobic001G515100 Sobic003G401100 Sobic003G401100 Sobic001G029400--Sobic003G401100 Sobic007G111100 Sobic007G111100 Sobic001G029400--Sobic007G111100 Sobic001G143500 Sobic001G143500 Sobic001G029400--Sobic001G143500 Sobic010G028300 Sobic010G028300 Sobic001G029400--Sobic010G028300 Sobic003G442000 Sobic003G442000 Sobic001G029400--Sobic003G442000 Sobic002G262700 Sobic002G262700 Sobic001G029400--Sobic002G262700 Sobic007G009400 Sobic007G009400 Sobic001G029400--Sobic007G009400 Sobic006G248500 Sobic006G248500 Sobic002G224700--Sobic006G248500 Sobic008G127400 Sobic008G127400 Sobic002G224700--Sobic008G127400 Sobic007G027700 Sobic007G027700 Sobic002G224700--Sobic007G027700 Sobic002G224700--Sobic001G029400 Sobic004G246700 Sobic004G246700 Sobic002G224700--Sobic004G246700 Sobic002G224700--Sobic007G111100 Sobic002G058300 Sobic002G058300 Sobic002G224700--Sobic002G058300 Sobic002G224700--Sobic001G143500 Sobic006G065800 Sobic006G065800 Sobic002G224700--Sobic006G065800 Sobic002G365100 Sobic002G365100 Sobic003G185200--Sobic002G365100 Sobic010G174800 Sobic010G174800 Sobic003G185200--Sobic010G174800 Sobic003G185200--Sobic003G248500 Sobic010G202600 Sobic010G202600 Sobic003G185200--Sobic010G202600 Sobic003G261300 Sobic003G261300 Sobic003G185200--Sobic003G261300 Sobic010G000700 Sobic010G000700 Sobic003G185200--Sobic010G000700 Sobic006G128800 Sobic006G128800 Sobic003G185200--Sobic006G128800 Sobic004G263900 Sobic004G263900 Sobic003G185200--Sobic004G263900 Sobic003G336800 Sobic003G336800 Sobic003G185200--Sobic003G336800 Sobic003G045400--Sobic001G467000 Sobic006G242300 Sobic006G242300 Sobic003G045400--Sobic006G242300 Sobic010G211300 Sobic010G211300 Sobic003G045400--Sobic010G211300 Sobic008G139700 Sobic008G139700 Sobic003G045400--Sobic008G139700 Sobic002G313500 Sobic002G313500 Sobic003G045400--Sobic002G313500 Sobic001G307900 Sobic001G307900 Sobic003G045400--Sobic001G307900 Sobic004G072800 Sobic004G072800 Sobic003G045400--Sobic004G072800 Sobic009G140700 Sobic009G140700 Sobic003G045400--Sobic009G140700 Sobic003G045400--Sobic001G143500 Sobic006G092800 Sobic006G092800 Sobic007G088900--Sobic006G092800 Sobic004G345700 Sobic004G345700 Sobic007G088900--Sobic004G345700 Sobic004G007300 Sobic004G007300 Sobic007G088900--Sobic004G007300 Sobic001G028400 Sobic001G028400 Sobic007G088900--Sobic001G028400 Sobic003G437500 Sobic003G437500 Sobic007G088900--Sobic003G437500 Sobic004G013600 Sobic004G013600 Sobic007G088900--Sobic004G013600 Sobic007G191100 Sobic007G191100 Sobic007G088900--Sobic007G191100 Sobic007G139400 Sobic007G139400 Sobic007G088900--Sobic007G139400 Sobic007G088900--Sobic003G248500 Sobic001G372000 Sobic001G372000 Sobic001G467000--Sobic001G372000 Sobic001G467000--Sobic003G045400 Sobic004G150400 Sobic004G150400 Sobic001G467000--Sobic004G150400 Sobic001G512600 Sobic001G512600 Sobic001G467000--Sobic001G512600 Sobic001G464100 Sobic001G464100 Sobic001G467000--Sobic001G464100 Sobic001G467000--Sobic002G313500 Sobic001G467000--Sobic001G028400 Sobic001G467000--Sobic010G211300 Sobic001G291100 Sobic001G291100 Sobic001G467000--Sobic001G291100 Sobic003G359300 Sobic003G359300 Sobic003G248500--Sobic003G359300 Sobic004G283000 Sobic004G283000 Sobic003G248500--Sobic004G283000 Sobic003G248500--Sobic010G174800 Sobic001G390500 Sobic001G390500 Sobic003G248500--Sobic001G390500 Sobic002G197100 Sobic002G197100 Sobic003G248500--Sobic002G197100 Sobic003G248500--Sobic003G185200 Sobic003G248500--Sobic002G365100 Sobic003G051200 Sobic003G051200 Sobic003G248500--Sobic003G051200 Sobic003G248500--Sobic006G128800 Sobic001G335201--Sobic007G088900 Sobic001G335201--Sobic003G311000 Sobic001G335201--Sobic007G139400 Sobic006G216000 Sobic006G216000 Sobic001G335201--Sobic006G216000 Sobic001G309100 Sobic001G309100 Sobic001G335201--Sobic001G309100 Sobic001G472100 Sobic001G472100 Sobic001G335201--Sobic001G472100 Sobic001G335201--Sobic001G537800 Sobic010G217200 Sobic010G217200 Sobic001G335201--Sobic010G217200 Sobic009G056300 Sobic009G056300 Sobic001G335201--Sobic009G056300 Sobic003G311000--Sobic001G390500 Sobic003G311000--Sobic001G309100 Sobic003G311000--Sobic007G088900 Sobic003G311000--Sobic001G335201 Sobic003G189900 Sobic003G189900 Sobic003G311000--Sobic003G189900 Sobic004G057800 Sobic004G057800 Sobic003G311000--Sobic004G057800 Sobic003G311000--Sobic001G472100 Sobic003G311000--Sobic003G185200 Sobic003G311000--Sobic002G365100
Octagon: transcription factors


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