Gene annotation
Transcriptome id Sobic.009G056300.1
Synonym AL2, Sb09g004740
Functional annotation PHD finger protein, putative, expressed
UniProt A0A1Z5R1T2
Pfam PF00628 PF12165
Panther DB PTHR12321 PTHR12321:SF37
NCBI CDD KOG1632; Uncharacterized PHD Zn-finger protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT5G05610 : alfin-like 1
RAP-DB (Rice) LOC_Os05g07040.1 : PHD finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a042928 , Zm00025a013368 , Zm00025a035663 , Zm00025a038035
Brachypodium KQK07333
Barley HORVU1Hr1G024210.4 , HORVU1Hr1G024210.5 , HORVU1Hr1G024210.1 , HORVU1Hr1G024210.2 , HORVU1Hr1G024210.3 , HORVU5Hr1G112420.4 , HORVU5Hr1G112420.20 , HORVU5Hr1G112420.21 , HORVU5Hr1G112420.22 , HORVU5Hr1G112420.23 , HORVU5Hr1G112420.1 , HORVU5Hr1G112420.3 , HORVU5Hr1G112420.2 , HORVU5Hr1G112420.9 , HORVU5Hr1G112420.8 , HORVU5Hr1G112420.5 , HORVU5Hr1G112420.7 , HORVU5Hr1G112420.11 , HORVU5Hr1G112420.10 , HORVU5Hr1G112420.13 , HORVU5Hr1G112420.12 , HORVU5Hr1G112420.15 , HORVU5Hr1G112420.14 , HORVU5Hr1G112420.17 , HORVU5Hr1G112420.16 , HORVU5Hr1G112420.19 , HORVU5Hr1G112420.18 , HORVU5Hr1G112420.6
Wheat TraesCS1B02G129400 , TraesCS1D02G111700 , TraesCS5D02G486400 , TraesCS5D02G486400 , TraesCS1A02G110200 , TraesCS5B02G486600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G056300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
2 Sobic.004G206300 pre-mRNA-splicing factor ISY1, putative, expressed K12870: pre-mRNA-splicing factor ISY1
3 Sobic.002G224700 NFKB, putative, expressed -
4 Sobic.009G194300 BSD, putative, expressed -
5 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)
6 Sobic.001G080000 expressed protein -
7 Sobic.004G027000 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
8 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
9 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
10 Sobic.001G136500 RNA recognition motif containing protein, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
11 Sobic.003G253400 expressed protein -
12 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
13 Sobic.007G139400 OsFBL33 - F-box domain and LRR containing protein, expressed -
14 Sobic.002G259400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
15 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
16 Sobic.003G311000 histone-lysine N-methyltransferase SUVR3, putative, expressed -
17 Sobic.005G025800 dual specificity protein phosphatase, putative, expressed K14819: DUSP12, dual specificity phosphatase 12
18 Sobic.003G307900 BSD domain containing protein, expressed -
19 Sobic.001G537800 SNF7 domain containing protein, putative, expressed K12193: VPS24, charged multivesicular body protein 3
20 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'


Gene co-expression network
sample Sobic009G056300 Sobic009G056300 Sobic008G125000 Sobic008G125000 Sobic009G056300--Sobic008G125000 Sobic004G206300 Sobic004G206300 Sobic009G056300--Sobic004G206300 Sobic002G224700 Sobic002G224700 Sobic009G056300--Sobic002G224700 Sobic009G194300 Sobic009G194300 Sobic009G056300--Sobic009G194300 Sobic001G041200 Sobic001G041200 Sobic009G056300--Sobic001G041200 Sobic001G080000 Sobic001G080000 Sobic009G056300--Sobic001G080000 Sobic004G027000 Sobic004G027000 Sobic009G056300--Sobic004G027000 Sobic002G394800 Sobic002G394800 Sobic009G056300--Sobic002G394800 Sobic001G152000 Sobic001G152000 Sobic009G056300--Sobic001G152000 Sobic008G125000--Sobic009G056300 Sobic001G115500 Sobic001G115500 Sobic008G125000--Sobic001G115500 Sobic006G245700 Sobic006G245700 Sobic008G125000--Sobic006G245700 Sobic003G307900 Sobic003G307900 Sobic008G125000--Sobic003G307900 Sobic004G075200 Sobic004G075200 Sobic008G125000--Sobic004G075200 Sobic009G120500 Sobic009G120500 Sobic008G125000--Sobic009G120500 Sobic007G010900 Sobic007G010900 Sobic008G125000--Sobic007G010900 Sobic006G041100 Sobic006G041100 Sobic008G125000--Sobic006G041100 Sobic004G358900 Sobic004G358900 Sobic008G125000--Sobic004G358900 Sobic004G212700 Sobic004G212700 Sobic004G206300--Sobic004G212700 Sobic004G206300--Sobic004G027000 Sobic004G206300--Sobic009G056300 Sobic004G129600 Sobic004G129600 Sobic004G206300--Sobic004G129600 Sobic009G031500 Sobic009G031500 Sobic004G206300--Sobic009G031500 Sobic004G206300--Sobic008G125000 Sobic004G225300 Sobic004G225300 Sobic004G206300--Sobic004G225300 Sobic001G335500 Sobic001G335500 Sobic004G206300--Sobic001G335500 Sobic001G099800 Sobic001G099800 Sobic004G206300--Sobic001G099800 Sobic006G248500 Sobic006G248500 Sobic002G224700--Sobic006G248500 Sobic008G127400 Sobic008G127400 Sobic002G224700--Sobic008G127400 Sobic007G027700 Sobic007G027700 Sobic002G224700--Sobic007G027700 Sobic001G029400 Sobic001G029400 Sobic002G224700--Sobic001G029400 Sobic004G246700 Sobic004G246700 Sobic002G224700--Sobic004G246700 Sobic007G111100 Sobic007G111100 Sobic002G224700--Sobic007G111100 Sobic002G058300 Sobic002G058300 Sobic002G224700--Sobic002G058300 Sobic001G143500 Sobic001G143500 Sobic002G224700--Sobic001G143500 Sobic006G065800 Sobic006G065800 Sobic002G224700--Sobic006G065800 Sobic009G194300--Sobic009G056300 Sobic002G231300 Sobic002G231300 Sobic009G194300--Sobic002G231300 Sobic007G125700 Sobic007G125700 Sobic009G194300--Sobic007G125700 Sobic003G005900 Sobic003G005900 Sobic009G194300--Sobic003G005900 Sobic005G040900 Sobic005G040900 Sobic009G194300--Sobic005G040900 Sobic003G253400 Sobic003G253400 Sobic009G194300--Sobic003G253400 Sobic003G304800 Sobic003G304800 Sobic009G194300--Sobic003G304800 Sobic004G145600 Sobic004G145600 Sobic009G194300--Sobic004G145600 Sobic007G036800 Sobic007G036800 Sobic009G194300--Sobic007G036800 Sobic006G242300 Sobic006G242300 Sobic001G041200--Sobic006G242300 Sobic003G119400 Sobic003G119400 Sobic001G041200--Sobic003G119400 Sobic006G257001 Sobic006G257001 Sobic001G041200--Sobic006G257001 Sobic006G034800 Sobic006G034800 Sobic001G041200--Sobic006G034800 Sobic001G067900 Sobic001G067900 Sobic001G041200--Sobic001G067900 Sobic002G259400 Sobic002G259400 Sobic001G041200--Sobic002G259400 Sobic001G105100 Sobic001G105100 Sobic001G041200--Sobic001G105100 Sobic006G056600 Sobic006G056600 Sobic001G041200--Sobic006G056600 Sobic009G033900 Sobic009G033900 Sobic001G041200--Sobic009G033900 Sobic003G405700 Sobic003G405700 Sobic001G080000--Sobic003G405700 Sobic008G139700 Sobic008G139700 Sobic001G080000--Sobic008G139700 Sobic002G272600 Sobic002G272600 Sobic001G080000--Sobic002G272600 Sobic002G180000 Sobic002G180000 Sobic001G080000--Sobic002G180000 Sobic010G105600 Sobic010G105600 Sobic001G080000--Sobic010G105600 Sobic001G080000--Sobic001G143500 Sobic001G010600 Sobic001G010600 Sobic001G080000--Sobic001G010600 Sobic003G045400 Sobic003G045400 Sobic001G080000--Sobic003G045400 Sobic007G205000 Sobic007G205000 Sobic001G080000--Sobic007G205000 Sobic004G027000--Sobic004G225300 Sobic004G027000--Sobic004G206300 Sobic002G139000 Sobic002G139000 Sobic004G027000--Sobic002G139000 Sobic004G027000--Sobic009G056300 Sobic004G027000--Sobic002G394800 Sobic001G422700 Sobic001G422700 Sobic004G027000--Sobic001G422700 Sobic001G280400 Sobic001G280400 Sobic004G027000--Sobic001G280400 Sobic005G164500 Sobic005G164500 Sobic004G027000--Sobic005G164500 Sobic004G184000 Sobic004G184000 Sobic004G027000--Sobic004G184000 Sobic006G233300 Sobic006G233300 Sobic002G394800--Sobic006G233300 Sobic002G143900 Sobic002G143900 Sobic002G394800--Sobic002G143900 Sobic006G233000 Sobic006G233000 Sobic002G394800--Sobic006G233000 Sobic002G280600 Sobic002G280600 Sobic002G394800--Sobic002G280600 Sobic002G394800--Sobic006G245700 Sobic006G272200 Sobic006G272200 Sobic002G394800--Sobic006G272200 Sobic001G370300 Sobic001G370300 Sobic002G394800--Sobic001G370300 Sobic004G249300 Sobic004G249300 Sobic002G394800--Sobic004G249300 Sobic002G430900 Sobic002G430900 Sobic002G394800--Sobic002G430900 Sobic002G268400 Sobic002G268400 Sobic001G152000--Sobic002G268400 Sobic004G074300 Sobic004G074300 Sobic001G152000--Sobic004G074300 Sobic001G152000--Sobic009G033900 Sobic001G294900 Sobic001G294900 Sobic001G152000--Sobic001G294900 Sobic004G019600 Sobic004G019600 Sobic001G152000--Sobic004G019600 Sobic006G252100 Sobic006G252100 Sobic001G152000--Sobic006G252100 Sobic001G009800 Sobic001G009800 Sobic001G152000--Sobic001G009800 Sobic001G152000--Sobic003G405700 Sobic006G183000 Sobic006G183000 Sobic001G152000--Sobic006G183000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.