Gene annotation
Transcriptome id Sobic.001G136500.2,Sobic.001G136500.1,Sobic.001G136500.3
Synonym Sb01g011910
Functional annotation RNA recognition motif containing protein, expressed
UniProt A0A1B6QIU5 , A0A1B6QIU7 , A0A1B6QIU6
Pfam PF00098 PF00098 PF00076
Panther DB PTHR24012 PTHR24012:SF476 PTHR24012 PTHR24012:SF459
NCBI CDD KOG0114; Predicted RNA-binding protein (RRM superfamily)
KEGG Orthology K12885; RBMX, heterogeneous nuclear ribonucleoprotein G
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G04280 : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
RAP-DB (Rice) LOC_Os03g47800.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a007600 , Zm00025a017112
Brachypodium PNT74311 , PNT74310 , KQK13779
Barley -
Wheat TraesCS4A02G288500
Populus -


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cDNA sequences
Sobic.001G136500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G132900 expressed protein -
2 Sobic.001G099800 nucleic acid binding protein, putative, expressed -
3 Sobic.009G056300 PHD finger protein, putative, expressed -
4 Sobic.008G008300 expressed protein -
5 Sobic.010G079800 expressed protein -
6 Sobic.006G276200 F-box domain containing protein, expressed -
7 Sobic.004G146200 MazG nucleotide pyrophosphohydrolase domain containing protein, expressed K16904: dCTP diphosphatase
8 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
9 Sobic.004G206300 pre-mRNA-splicing factor ISY1, putative, expressed K12870: pre-mRNA-splicing factor ISY1
10 Sobic.003G058900 TATA-binding protein-associated factor 2N, putative, expressed K13098: TLS, RNA-binding protein FUS
11 Sobic.003G016400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.010G170900 expressed protein -
13 Sobic.003G003000 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
14 Sobic.009G233700 CobW/P47K family protein, putative, expressed K03189: urease accessory protein
15 Sobic.004G129600 expressed protein -
16 Sobic.001G188700 OST3/OST6 family protein, putative, expressed K12669: OST3, oligosaccharyltransferase complex subunit gamma
17 Sobic.007G043600 LSM domain containing protein, expressed K12621: U6 snRNA-associated Sm-like protein LSm2
18 Sobic.003G151000 AGAP010768-PA, putative, expressed -
19 Sobic.007G050300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
20 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3


Gene co-expression network
sample Sobic001G136500 Sobic001G136500 Sobic001G132900 Sobic001G132900 Sobic001G136500--Sobic001G132900 Sobic001G099800 Sobic001G099800 Sobic001G136500--Sobic001G099800 Sobic009G056300 Sobic009G056300 Sobic001G136500--Sobic009G056300 Sobic008G008300 Sobic008G008300 Sobic001G136500--Sobic008G008300 Sobic010G079800 Sobic010G079800 Sobic001G136500--Sobic010G079800 Sobic006G276200 Sobic006G276200 Sobic001G136500--Sobic006G276200 Sobic004G146200 Sobic004G146200 Sobic001G136500--Sobic004G146200 Sobic008G125000 Sobic008G125000 Sobic001G136500--Sobic008G125000 Sobic004G206300 Sobic004G206300 Sobic001G136500--Sobic004G206300 Sobic003G003000 Sobic003G003000 Sobic001G132900--Sobic003G003000 Sobic001G008800 Sobic001G008800 Sobic001G132900--Sobic001G008800 Sobic009G209100 Sobic009G209100 Sobic001G132900--Sobic009G209100 Sobic001G129400 Sobic001G129400 Sobic001G132900--Sobic001G129400 Sobic001G404100 Sobic001G404100 Sobic001G132900--Sobic001G404100 Sobic010G018000 Sobic010G018000 Sobic001G132900--Sobic010G018000 Sobic001G132900--Sobic001G136500 Sobic009G130400 Sobic009G130400 Sobic001G132900--Sobic009G130400 Sobic004G117800 Sobic004G117800 Sobic001G132900--Sobic004G117800 Sobic003G058900 Sobic003G058900 Sobic001G099800--Sobic003G058900 Sobic001G099800--Sobic001G136500 Sobic001G099800--Sobic001G132900 Sobic001G280400 Sobic001G280400 Sobic001G099800--Sobic001G280400 Sobic001G099800--Sobic004G206300 Sobic001G099800--Sobic008G008300 Sobic001G099800--Sobic008G125000 Sobic001G099800--Sobic004G117800 Sobic008G051100 Sobic008G051100 Sobic001G099800--Sobic008G051100 Sobic009G056300--Sobic008G125000 Sobic009G056300--Sobic004G206300 Sobic002G224700 Sobic002G224700 Sobic009G056300--Sobic002G224700 Sobic009G194300 Sobic009G194300 Sobic009G056300--Sobic009G194300 Sobic001G041200 Sobic001G041200 Sobic009G056300--Sobic001G041200 Sobic001G080000 Sobic001G080000 Sobic009G056300--Sobic001G080000 Sobic004G027000 Sobic004G027000 Sobic009G056300--Sobic004G027000 Sobic002G394800 Sobic002G394800 Sobic009G056300--Sobic002G394800 Sobic001G152000 Sobic001G152000 Sobic009G056300--Sobic001G152000 Sobic008G008300--Sobic001G136500 Sobic010G001800 Sobic010G001800 Sobic008G008300--Sobic010G001800 Sobic008G008300--Sobic001G132900 Sobic003G016400 Sobic003G016400 Sobic008G008300--Sobic003G016400 Sobic008G008300--Sobic004G206300 Sobic008G008300--Sobic001G099800 Sobic008G107900 Sobic008G107900 Sobic008G008300--Sobic008G107900 Sobic008G008300--Sobic008G125000 Sobic009G256700 Sobic009G256700 Sobic008G008300--Sobic009G256700 Sobic001G239100 Sobic001G239100 Sobic010G079800--Sobic001G239100 Sobic007G050300 Sobic007G050300 Sobic010G079800--Sobic007G050300 Sobic010G079800--Sobic001G136500 Sobic010G079800--Sobic004G146200 Sobic007G153700 Sobic007G153700 Sobic010G079800--Sobic007G153700 Sobic007G031100 Sobic007G031100 Sobic010G079800--Sobic007G031100 Sobic001G478700 Sobic001G478700 Sobic010G079800--Sobic001G478700 Sobic010G079800--Sobic004G206300 Sobic001G188700 Sobic001G188700 Sobic010G079800--Sobic001G188700 Sobic001G434400 Sobic001G434400 Sobic006G276200--Sobic001G434400 Sobic001G544100 Sobic001G544100 Sobic006G276200--Sobic001G544100 Sobic010G088300 Sobic010G088300 Sobic006G276200--Sobic010G088300 Sobic002G279000 Sobic002G279000 Sobic006G276200--Sobic002G279000 Sobic004G242100 Sobic004G242100 Sobic006G276200--Sobic004G242100 Sobic006G276200--Sobic001G136500 Sobic006G276200--Sobic003G003000 Sobic001G199300 Sobic001G199300 Sobic006G276200--Sobic001G199300 Sobic007G043600 Sobic007G043600 Sobic006G276200--Sobic007G043600 Sobic004G146200--Sobic010G079800 Sobic004G146200--Sobic001G136500 Sobic009G232500 Sobic009G232500 Sobic004G146200--Sobic009G232500 Sobic004G146200--Sobic001G239100 Sobic001G440900 Sobic001G440900 Sobic004G146200--Sobic001G440900 Sobic001G033000 Sobic001G033000 Sobic004G146200--Sobic001G033000 Sobic004G146200--Sobic004G206300 Sobic004G146200--Sobic007G153700 Sobic004G146200--Sobic008G008300 Sobic008G125000--Sobic009G056300 Sobic001G115500 Sobic001G115500 Sobic008G125000--Sobic001G115500 Sobic006G245700 Sobic006G245700 Sobic008G125000--Sobic006G245700 Sobic003G307900 Sobic003G307900 Sobic008G125000--Sobic003G307900 Sobic004G075200 Sobic004G075200 Sobic008G125000--Sobic004G075200 Sobic009G120500 Sobic009G120500 Sobic008G125000--Sobic009G120500 Sobic007G010900 Sobic007G010900 Sobic008G125000--Sobic007G010900 Sobic006G041100 Sobic006G041100 Sobic008G125000--Sobic006G041100 Sobic004G358900 Sobic004G358900 Sobic008G125000--Sobic004G358900 Sobic004G212700 Sobic004G212700 Sobic004G206300--Sobic004G212700 Sobic004G206300--Sobic004G027000 Sobic004G206300--Sobic009G056300 Sobic004G129600 Sobic004G129600 Sobic004G206300--Sobic004G129600 Sobic009G031500 Sobic009G031500 Sobic004G206300--Sobic009G031500 Sobic004G206300--Sobic008G125000 Sobic004G225300 Sobic004G225300 Sobic004G206300--Sobic004G225300 Sobic001G335500 Sobic001G335500 Sobic004G206300--Sobic001G335500 Sobic004G206300--Sobic001G099800
Octagon: transcription factors


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