Gene annotation
Transcriptome id Sobic.006G276200.1
Synonym Sb06g033750
Functional annotation F-box domain containing protein, expressed
UniProt C5YB13
Pfam PF00646
Panther DB PTHR32133 PTHR32133:SF84
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G76920 : F-box family protein
RAP-DB (Rice) LOC_Os04g59010.1 : F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010495 , Zm00025a057477
Brachypodium PNT62190
Barley HORVU2Hr1G124610.1 , HORVU2Hr1G124610.2 , HORVU7Hr1G066100.1 , HORVU7Hr1G083560.1 , HORVU5Hr1G045010.1 , HORVU2Hr1G124540.2 , HORVU7Hr1G083580.1 , HORVU7Hr1G083580.2 , HORVU7Hr1G083600.1 , HORVU2Hr1G064800.2 , HORVU2Hr1G064800.3 , HORVU2Hr1G064800.1 , HORVU2Hr1G124540.1
Wheat TraesCS4A02G184400
Populus -


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cDNA sequences
Sobic.006G276200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G434400 ufm1-conjugating enzyme 1, putative, expressed K12165: ufm1-conjugating enzyme 1
2 Sobic.001G544100 peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed -
3 Sobic.010G088300 serine/threonine-protein phosphatase 2A activator 2, putative, expressed K17605: PPP2R4, serine/threonine-protein phosphatase 2A activator
4 Sobic.002G279000 peptidase, T1 family, putative, expressed K02731: 20S proteasome subunit alpha 4
5 Sobic.004G242100 expressed protein -
6 Sobic.001G136500 RNA recognition motif containing protein, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
7 Sobic.003G003000 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
8 Sobic.001G199300 GIL1, putative, expressed -
9 Sobic.007G043600 LSM domain containing protein, expressed K12621: U6 snRNA-associated Sm-like protein LSm2
10 Sobic.001G132900 expressed protein -
11 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
12 Sobic.006G087100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14943: muscleblind
13 Sobic.005G110526 - -
14 Sobic.001G168600 serpin domain containing protein, putative, expressed K13963: serpin B
15 Sobic.010G079800 expressed protein -
16 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
17 Sobic.003G190800 GA18326-PA, putative, expressed -
18 Sobic.001G218800 expressed protein -
19 Sobic.003G016400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.005G206700 WD domain, G-beta repeat domain containing protein, expressed K12602: WDR61, REC14, WD repeat-containing protein 61


Gene co-expression network
sample Sobic006G276200 Sobic006G276200 Sobic001G434400 Sobic001G434400 Sobic006G276200--Sobic001G434400 Sobic001G544100 Sobic001G544100 Sobic006G276200--Sobic001G544100 Sobic010G088300 Sobic010G088300 Sobic006G276200--Sobic010G088300 Sobic002G279000 Sobic002G279000 Sobic006G276200--Sobic002G279000 Sobic004G242100 Sobic004G242100 Sobic006G276200--Sobic004G242100 Sobic001G136500 Sobic001G136500 Sobic006G276200--Sobic001G136500 Sobic003G003000 Sobic003G003000 Sobic006G276200--Sobic003G003000 Sobic001G199300 Sobic001G199300 Sobic006G276200--Sobic001G199300 Sobic007G043600 Sobic007G043600 Sobic006G276200--Sobic007G043600 Sobic001G434400--Sobic006G276200 Sobic001G434400--Sobic010G088300 Sobic004G012800 Sobic004G012800 Sobic001G434400--Sobic004G012800 Sobic006G231500 Sobic006G231500 Sobic001G434400--Sobic006G231500 Sobic001G434400--Sobic004G242100 Sobic004G137900 Sobic004G137900 Sobic001G434400--Sobic004G137900 Sobic006G109700 Sobic006G109700 Sobic001G434400--Sobic006G109700 Sobic001G130400 Sobic001G130400 Sobic001G434400--Sobic001G130400 Sobic005G110526 Sobic005G110526 Sobic001G434400--Sobic005G110526 Sobic001G544100--Sobic004G242100 Sobic001G544100--Sobic004G137900 Sobic001G532100 Sobic001G532100 Sobic001G544100--Sobic001G532100 Sobic001G544100--Sobic002G279000 Sobic004G260400 Sobic004G260400 Sobic001G544100--Sobic004G260400 Sobic001G094500 Sobic001G094500 Sobic001G544100--Sobic001G094500 Sobic001G544100--Sobic004G012800 Sobic001G544100--Sobic006G276200 Sobic001G009800 Sobic001G009800 Sobic001G544100--Sobic001G009800 Sobic003G031200 Sobic003G031200 Sobic010G088300--Sobic003G031200 Sobic003G043400 Sobic003G043400 Sobic010G088300--Sobic003G043400 Sobic010G088300--Sobic001G199300 Sobic010G088300--Sobic001G434400 Sobic002G423800 Sobic002G423800 Sobic010G088300--Sobic002G423800 Sobic010G088300--Sobic004G137900 Sobic004G204800 Sobic004G204800 Sobic010G088300--Sobic004G204800 Sobic002G044000 Sobic002G044000 Sobic010G088300--Sobic002G044000 Sobic003G126800 Sobic003G126800 Sobic010G088300--Sobic003G126800 Sobic002G279000--Sobic001G094500 Sobic002G279000--Sobic004G137900 Sobic002G279000--Sobic001G544100 Sobic006G231700 Sobic006G231700 Sobic002G279000--Sobic006G231700 Sobic002G279000--Sobic001G532100 Sobic003G190800 Sobic003G190800 Sobic002G279000--Sobic003G190800 Sobic002G279000--Sobic004G012800 Sobic007G152400 Sobic007G152400 Sobic002G279000--Sobic007G152400 Sobic004G175700 Sobic004G175700 Sobic002G279000--Sobic004G175700 Sobic001G402600 Sobic001G402600 Sobic004G242100--Sobic001G402600 Sobic004G242100--Sobic003G031200 Sobic003G435000 Sobic003G435000 Sobic004G242100--Sobic003G435000 Sobic004G242100--Sobic001G544100 Sobic006G236500 Sobic006G236500 Sobic004G242100--Sobic006G236500 Sobic009G016500 Sobic009G016500 Sobic004G242100--Sobic009G016500 Sobic004G242100--Sobic004G012800 Sobic007G037000 Sobic007G037000 Sobic004G242100--Sobic007G037000 Sobic004G242100--Sobic001G434400 Sobic001G132900 Sobic001G132900 Sobic001G136500--Sobic001G132900 Sobic001G099800 Sobic001G099800 Sobic001G136500--Sobic001G099800 Sobic009G056300 Sobic009G056300 Sobic001G136500--Sobic009G056300 Sobic008G008300 Sobic008G008300 Sobic001G136500--Sobic008G008300 Sobic010G079800 Sobic010G079800 Sobic001G136500--Sobic010G079800 Sobic001G136500--Sobic006G276200 Sobic004G146200 Sobic004G146200 Sobic001G136500--Sobic004G146200 Sobic008G125000 Sobic008G125000 Sobic001G136500--Sobic008G125000 Sobic004G206300 Sobic004G206300 Sobic001G136500--Sobic004G206300 Sobic001G129400 Sobic001G129400 Sobic003G003000--Sobic001G129400 Sobic003G003000--Sobic001G132900 Sobic006G281200 Sobic006G281200 Sobic003G003000--Sobic006G281200 Sobic010G018000 Sobic010G018000 Sobic003G003000--Sobic010G018000 Sobic001G008800 Sobic001G008800 Sobic003G003000--Sobic001G008800 Sobic004G018400 Sobic004G018400 Sobic003G003000--Sobic004G018400 Sobic002G117200 Sobic002G117200 Sobic003G003000--Sobic002G117200 Sobic010G094800 Sobic010G094800 Sobic003G003000--Sobic010G094800 Sobic005G127100 Sobic005G127100 Sobic003G003000--Sobic005G127100 Sobic001G199300--Sobic010G088300 Sobic001G199300--Sobic003G043400 Sobic005G187500 Sobic005G187500 Sobic001G199300--Sobic005G187500 Sobic001G199300--Sobic003G031200 Sobic001G199300--Sobic001G544100 Sobic003G307900 Sobic003G307900 Sobic001G199300--Sobic003G307900 Sobic001G199300--Sobic003G190800 Sobic001G199300--Sobic001G434400 Sobic001G199300--Sobic004G242100 Sobic007G043600--Sobic003G003000 Sobic007G043600--Sobic006G281200 Sobic007G043600--Sobic010G018000 Sobic001G473400 Sobic001G473400 Sobic007G043600--Sobic001G473400 Sobic006G079900 Sobic006G079900 Sobic007G043600--Sobic006G079900 Sobic009G188300 Sobic009G188300 Sobic007G043600--Sobic009G188300 Sobic009G124400 Sobic009G124400 Sobic007G043600--Sobic009G124400 Sobic007G043600--Sobic004G137900 Sobic007G043600--Sobic006G276200
Octagon: transcription factors


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