Gene annotation
Transcriptome id Sobic.003G190800.1
Synonym Sb03g025500
Functional annotation GA18326-PA, putative, expressed
UniProt C5XNN4
Pfam PF05907
Panther DB PTHR12857 PTHR12857:SF0
NCBI CDD KOG1296; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G32930 : -
RAP-DB (Rice) LOC_Os01g38480.1 : GA18326-PA, putative, expressed
MaizeGDB (Corn) Zm00025a038369 , Zm00025a028418
Brachypodium KQK08352
Barley HORVU3Hr1G048620.1 , HORVU3Hr1G048620.2
Wheat TraesCS3A02G207500 , TraesCS3B02G234700 , TraesCS3D02G208000 , TraesCS3A02G207500 , TraesCS3D02G208000 , TraesCS3D02G208000
Populus -


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cDNA sequences
Sobic.003G190800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8
2 Sobic.009G124400 similar to Putative uncharacterized protein(PubMedID : 29862293)@LSM domain containing protein, expressed K12624: U6 snRNA-associated Sm-like protein LSm5
3 Sobic.009G258600 LSM domain containing protein, expressed K12627: U6 snRNA-associated Sm-like protein LSm8
4 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3
5 Sobic.002G279000 peptidase, T1 family, putative, expressed K02731: 20S proteasome subunit alpha 4
6 Sobic.005G206700 WD domain, G-beta repeat domain containing protein, expressed K12602: WDR61, REC14, WD repeat-containing protein 61
7 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
8 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
9 Sobic.001G199300 GIL1, putative, expressed -
10 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
11 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
12 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
13 Sobic.010G210000 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
14 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
15 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
16 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
17 Sobic.001G434400 ufm1-conjugating enzyme 1, putative, expressed K12165: ufm1-conjugating enzyme 1
18 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
19 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
20 Sobic.007G068000 postsynaptic protein CRIPT, putative, expressed -


Gene co-expression network
sample Sobic003G190800 Sobic003G190800 Sobic006G079900 Sobic006G079900 Sobic003G190800--Sobic006G079900 Sobic009G124400 Sobic009G124400 Sobic003G190800--Sobic009G124400 Sobic009G258600 Sobic009G258600 Sobic003G190800--Sobic009G258600 Sobic003G367900 Sobic003G367900 Sobic003G190800--Sobic003G367900 Sobic002G279000 Sobic002G279000 Sobic003G190800--Sobic002G279000 Sobic005G206700 Sobic005G206700 Sobic003G190800--Sobic005G206700 Sobic006G231700 Sobic006G231700 Sobic003G190800--Sobic006G231700 Sobic004G137900 Sobic004G137900 Sobic003G190800--Sobic004G137900 Sobic001G199300 Sobic001G199300 Sobic003G190800--Sobic001G199300 Sobic007G217400 Sobic007G217400 Sobic006G079900--Sobic007G217400 Sobic006G079900--Sobic009G124400 Sobic006G079900--Sobic003G190800 Sobic002G331300 Sobic002G331300 Sobic006G079900--Sobic002G331300 Sobic003G028100 Sobic003G028100 Sobic006G079900--Sobic003G028100 Sobic001G542900 Sobic001G542900 Sobic006G079900--Sobic001G542900 Sobic001G431700 Sobic001G431700 Sobic006G079900--Sobic001G431700 Sobic006G079900--Sobic003G367900 Sobic001G404100 Sobic001G404100 Sobic006G079900--Sobic001G404100 Sobic007G152400 Sobic007G152400 Sobic009G124400--Sobic007G152400 Sobic009G124400--Sobic006G079900 Sobic009G124400--Sobic007G217400 Sobic009G124400--Sobic002G331300 Sobic001G025600 Sobic001G025600 Sobic009G124400--Sobic001G025600 Sobic009G120100 Sobic009G120100 Sobic009G124400--Sobic009G120100 Sobic009G124400--Sobic003G190800 Sobic004G204800 Sobic004G204800 Sobic009G124400--Sobic004G204800 Sobic009G124400--Sobic001G542900 Sobic003G127700 Sobic003G127700 Sobic009G258600--Sobic003G127700 Sobic010G210000 Sobic010G210000 Sobic009G258600--Sobic010G210000 Sobic009G258600--Sobic003G367900 Sobic009G258600--Sobic003G028100 Sobic009G012700 Sobic009G012700 Sobic009G258600--Sobic009G012700 Sobic009G258600--Sobic004G137900 Sobic009G258600--Sobic002G331300 Sobic001G096100 Sobic001G096100 Sobic009G258600--Sobic001G096100 Sobic009G258600--Sobic003G190800 Sobic003G367900--Sobic001G404100 Sobic006G052400 Sobic006G052400 Sobic003G367900--Sobic006G052400 Sobic003G367900--Sobic001G096100 Sobic006G281200 Sobic006G281200 Sobic003G367900--Sobic006G281200 Sobic003G367900--Sobic003G127700 Sobic003G367900--Sobic002G331300 Sobic004G175700 Sobic004G175700 Sobic003G367900--Sobic004G175700 Sobic003G367900--Sobic009G258600 Sobic008G100000 Sobic008G100000 Sobic003G367900--Sobic008G100000 Sobic001G094500 Sobic001G094500 Sobic002G279000--Sobic001G094500 Sobic002G279000--Sobic004G137900 Sobic001G544100 Sobic001G544100 Sobic002G279000--Sobic001G544100 Sobic002G279000--Sobic006G231700 Sobic001G532100 Sobic001G532100 Sobic002G279000--Sobic001G532100 Sobic002G279000--Sobic003G190800 Sobic004G012800 Sobic004G012800 Sobic002G279000--Sobic004G012800 Sobic002G279000--Sobic007G152400 Sobic002G279000--Sobic004G175700 Sobic005G206700--Sobic006G231700 Sobic006G013900 Sobic006G013900 Sobic005G206700--Sobic006G013900 Sobic005G206700--Sobic004G137900 Sobic010G054200 Sobic010G054200 Sobic005G206700--Sobic010G054200 Sobic004G063500 Sobic004G063500 Sobic005G206700--Sobic004G063500 Sobic001G233800 Sobic001G233800 Sobic005G206700--Sobic001G233800 Sobic005G206700--Sobic007G152400 Sobic005G206700--Sobic009G120100 Sobic005G206700--Sobic002G331300 Sobic005G111100 Sobic005G111100 Sobic006G231700--Sobic005G111100 Sobic007G163700 Sobic007G163700 Sobic006G231700--Sobic007G163700 Sobic006G231700--Sobic001G094500 Sobic006G231700--Sobic006G013900 Sobic003G358300 Sobic003G358300 Sobic006G231700--Sobic003G358300 Sobic001G128400 Sobic001G128400 Sobic006G231700--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic006G231700--Sobic003G129800 Sobic001G517600 Sobic001G517600 Sobic006G231700--Sobic001G517600 Sobic006G231700--Sobic004G137900 Sobic004G137900--Sobic004G012800 Sobic004G137900--Sobic006G231700 Sobic004G137900--Sobic003G358300 Sobic004G137900--Sobic006G013900 Sobic004G137900--Sobic002G331300 Sobic001G286300 Sobic001G286300 Sobic004G137900--Sobic001G286300 Sobic004G137900--Sobic009G120100 Sobic004G137900--Sobic003G129800 Sobic004G137900--Sobic005G111100 Sobic010G088300 Sobic010G088300 Sobic001G199300--Sobic010G088300 Sobic003G043400 Sobic003G043400 Sobic001G199300--Sobic003G043400 Sobic005G187500 Sobic005G187500 Sobic001G199300--Sobic005G187500 Sobic003G031200 Sobic003G031200 Sobic001G199300--Sobic003G031200 Sobic001G199300--Sobic001G544100 Sobic003G307900 Sobic003G307900 Sobic001G199300--Sobic003G307900 Sobic001G199300--Sobic003G190800 Sobic001G434400 Sobic001G434400 Sobic001G199300--Sobic001G434400 Sobic004G242100 Sobic004G242100 Sobic001G199300--Sobic004G242100
Octagon: transcription factors


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