Gene annotation
Transcriptome id Sobic.009G124400.1
Synonym SAD1, Sb09g019200
Functional annotation similar to Putative uncharacterized protein (PubMedID : 29862293)
LSM domain containing protein, expressed
UniProt C5YXH0
Pfam PF01423
Panther DB PTHR20971
NCBI CDD KOG1775; U6 snRNA-associated Sm-like protein
KEGG Orthology K12624; U6 snRNA-associated Sm-like protein LSm5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G48870 : Small nuclear ribonucleoprotein family protein
RAP-DB (Rice) LOC_Os05g32310.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043541
Brachypodium KQK06508
Barley HORVU1Hr1G056490.1
Wheat TraesCS1D02G242900 , TraesCS1B02G254400 , TraesCS1A02G242900
Populus -


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cDNA sequences
Sobic.009G124400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
2 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8
3 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
4 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
5 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
6 Sobic.009G120100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
7 Sobic.003G190800 GA18326-PA, putative, expressed -
8 Sobic.004G204800 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
9 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
10 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
11 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
12 Sobic.005G206700 WD domain, G-beta repeat domain containing protein, expressed K12602: WDR61, REC14, WD repeat-containing protein 61
13 Sobic.005G091700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
14 Sobic.002G257400 peptidase, T1 family, putative, expressed -
15 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
16 Sobic.009G234400 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
17 Sobic.004G103700 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
18 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
19 Sobic.010G213200 WD domain, G-beta repeat domain containing protein, expressed K12857: SNRNP40, Prp8 binding protein
20 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2


Gene co-expression network
sample Sobic009G124400 Sobic009G124400 Sobic007G152400 Sobic007G152400 Sobic009G124400--Sobic007G152400 Sobic006G079900 Sobic006G079900 Sobic009G124400--Sobic006G079900 Sobic007G217400 Sobic007G217400 Sobic009G124400--Sobic007G217400 Sobic002G331300 Sobic002G331300 Sobic009G124400--Sobic002G331300 Sobic001G025600 Sobic001G025600 Sobic009G124400--Sobic001G025600 Sobic009G120100 Sobic009G120100 Sobic009G124400--Sobic009G120100 Sobic003G190800 Sobic003G190800 Sobic009G124400--Sobic003G190800 Sobic004G204800 Sobic004G204800 Sobic009G124400--Sobic004G204800 Sobic001G542900 Sobic001G542900 Sobic009G124400--Sobic001G542900 Sobic005G111100 Sobic005G111100 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic002G428200 Sobic002G428200 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic008G137600 Sobic008G137600 Sobic007G152400--Sobic008G137600 Sobic007G152400--Sobic004G204800 Sobic007G152400--Sobic002G331300 Sobic006G079900--Sobic007G217400 Sobic006G079900--Sobic009G124400 Sobic006G079900--Sobic003G190800 Sobic006G079900--Sobic002G331300 Sobic003G028100 Sobic003G028100 Sobic006G079900--Sobic003G028100 Sobic006G079900--Sobic001G542900 Sobic001G431700 Sobic001G431700 Sobic006G079900--Sobic001G431700 Sobic003G367900 Sobic003G367900 Sobic006G079900--Sobic003G367900 Sobic001G404100 Sobic001G404100 Sobic006G079900--Sobic001G404100 Sobic007G217400--Sobic001G542900 Sobic009G212300 Sobic009G212300 Sobic007G217400--Sobic009G212300 Sobic007G217400--Sobic006G079900 Sobic007G165300 Sobic007G165300 Sobic007G217400--Sobic007G165300 Sobic007G217400--Sobic008G137600 Sobic009G234400 Sobic009G234400 Sobic007G217400--Sobic009G234400 Sobic009G207200 Sobic009G207200 Sobic007G217400--Sobic009G207200 Sobic002G423800 Sobic002G423800 Sobic007G217400--Sobic002G423800 Sobic006G211800 Sobic006G211800 Sobic007G217400--Sobic006G211800 Sobic006G115000 Sobic006G115000 Sobic002G331300--Sobic006G115000 Sobic005G050500 Sobic005G050500 Sobic002G331300--Sobic005G050500 Sobic003G129800 Sobic003G129800 Sobic002G331300--Sobic003G129800 Sobic009G179100 Sobic009G179100 Sobic002G331300--Sobic009G179100 Sobic004G342400 Sobic004G342400 Sobic002G331300--Sobic004G342400 Sobic001G334300 Sobic001G334300 Sobic002G331300--Sobic001G334300 Sobic009G233400 Sobic009G233400 Sobic002G331300--Sobic009G233400 Sobic009G227400 Sobic009G227400 Sobic002G331300--Sobic009G227400 Sobic010G023900 Sobic010G023900 Sobic002G331300--Sobic010G023900 Sobic004G103700 Sobic004G103700 Sobic001G025600--Sobic004G103700 Sobic001G172000 Sobic001G172000 Sobic001G025600--Sobic001G172000 Sobic001G025600--Sobic001G481700 Sobic001G025600--Sobic003G129800 Sobic001G513500 Sobic001G513500 Sobic001G025600--Sobic001G513500 Sobic003G442400 Sobic003G442400 Sobic001G025600--Sobic003G442400 Sobic004G224900 Sobic004G224900 Sobic001G025600--Sobic004G224900 Sobic001G018800 Sobic001G018800 Sobic001G025600--Sobic001G018800 Sobic003G287300 Sobic003G287300 Sobic001G025600--Sobic003G287300 Sobic004G063500 Sobic004G063500 Sobic009G120100--Sobic004G063500 Sobic009G120100--Sobic007G152400 Sobic001G286300 Sobic001G286300 Sobic009G120100--Sobic001G286300 Sobic006G095200 Sobic006G095200 Sobic009G120100--Sobic006G095200 Sobic009G120100--Sobic002G331300 Sobic009G070200 Sobic009G070200 Sobic009G120100--Sobic009G070200 Sobic003G233500 Sobic003G233500 Sobic009G120100--Sobic003G233500 Sobic009G120100--Sobic005G111100 Sobic007G029400 Sobic007G029400 Sobic009G120100--Sobic007G029400 Sobic003G190800--Sobic006G079900 Sobic003G190800--Sobic009G124400 Sobic009G258600 Sobic009G258600 Sobic003G190800--Sobic009G258600 Sobic003G190800--Sobic003G367900 Sobic002G279000 Sobic002G279000 Sobic003G190800--Sobic002G279000 Sobic005G206700 Sobic005G206700 Sobic003G190800--Sobic005G206700 Sobic006G231700 Sobic006G231700 Sobic003G190800--Sobic006G231700 Sobic004G137900 Sobic004G137900 Sobic003G190800--Sobic004G137900 Sobic001G199300 Sobic001G199300 Sobic003G190800--Sobic001G199300 Sobic004G204800--Sobic002G257400 Sobic004G204800--Sobic007G152400 Sobic004G335000 Sobic004G335000 Sobic004G204800--Sobic004G335000 Sobic003G043400 Sobic003G043400 Sobic004G204800--Sobic003G043400 Sobic010G266300 Sobic010G266300 Sobic004G204800--Sobic010G266300 Sobic001G058100 Sobic001G058100 Sobic004G204800--Sobic001G058100 Sobic004G204800--Sobic002G428200 Sobic003G428200 Sobic003G428200 Sobic004G204800--Sobic003G428200 Sobic001G010700 Sobic001G010700 Sobic004G204800--Sobic001G010700 Sobic001G542900--Sobic007G217400 Sobic001G542900--Sobic002G423800 Sobic001G542900--Sobic004G335000 Sobic008G110500 Sobic008G110500 Sobic001G542900--Sobic008G110500 Sobic001G542900--Sobic003G043400 Sobic001G444300 Sobic001G444300 Sobic001G542900--Sobic001G444300 Sobic002G141700 Sobic002G141700 Sobic001G542900--Sobic002G141700 Sobic009G164700 Sobic009G164700 Sobic001G542900--Sobic009G164700 Sobic007G176200 Sobic007G176200 Sobic001G542900--Sobic007G176200
Octagon: transcription factors


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