Gene annotation
Transcriptome id Sobic.010G213200.1
Synonym Sb10g025990
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5Z768
Pfam PF00400
Panther DB PTHR22847 PTHR22847:SF501
NCBI CDD -
KEGG Orthology K12857; SNRNP40, Prp8 binding protein
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G43770 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os06g44370.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a042021 , Zm00025a051722
Brachypodium KQK16870
Barley HORVU7Hr1G111780.5 , HORVU7Hr1G111780.4 , HORVU7Hr1G111780.3 , HORVU7Hr1G111780.2
Wheat -
Populus -


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cDNA sequences
Sobic.010G213200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G062400 LSM domain containing protein, expressed K11098: SNRPF, small nuclear ribonucleoprotein F
2 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
3 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
4 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
5 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
6 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
7 Sobic.002G257400 peptidase, T1 family, putative, expressed -
8 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
9 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
10 Sobic.009G212400 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
11 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
12 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
13 Sobic.007G220900 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
14 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
15 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
16 Sobic.005G091700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
17 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
18 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
19 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
20 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e


Gene co-expression network
sample Sobic010G213200 Sobic010G213200 Sobic004G062400 Sobic004G062400 Sobic010G213200--Sobic004G062400 Sobic001G481700 Sobic001G481700 Sobic010G213200--Sobic001G481700 Sobic010G100000 Sobic010G100000 Sobic010G213200--Sobic010G100000 Sobic007G152400 Sobic007G152400 Sobic010G213200--Sobic007G152400 Sobic005G050500 Sobic005G050500 Sobic010G213200--Sobic005G050500 Sobic002G428200 Sobic002G428200 Sobic010G213200--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic010G213200--Sobic002G257400 Sobic001G517600 Sobic001G517600 Sobic010G213200--Sobic001G517600 Sobic004G224900 Sobic004G224900 Sobic010G213200--Sobic004G224900 Sobic004G062400--Sobic010G213200 Sobic001G018800 Sobic001G018800 Sobic004G062400--Sobic001G018800 Sobic010G210000 Sobic010G210000 Sobic004G062400--Sobic010G210000 Sobic004G062400--Sobic010G100000 Sobic002G331300 Sobic002G331300 Sobic004G062400--Sobic002G331300 Sobic004G062400--Sobic001G481700 Sobic002G419100 Sobic002G419100 Sobic004G062400--Sobic002G419100 Sobic008G073300 Sobic008G073300 Sobic004G062400--Sobic008G073300 Sobic003G018600 Sobic003G018600 Sobic004G062400--Sobic003G018600 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic001G481700--Sobic004G224900 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic001G513500 Sobic001G513500 Sobic010G100000--Sobic001G513500 Sobic001G011200 Sobic001G011200 Sobic010G100000--Sobic001G011200 Sobic010G100000--Sobic005G050500 Sobic001G436200 Sobic001G436200 Sobic010G100000--Sobic001G436200 Sobic003G280700 Sobic003G280700 Sobic010G100000--Sobic003G280700 Sobic010G100000--Sobic001G481700 Sobic005G091700 Sobic005G091700 Sobic010G100000--Sobic005G091700 Sobic010G100000--Sobic001G018800 Sobic002G406500 Sobic002G406500 Sobic010G100000--Sobic002G406500 Sobic005G111100 Sobic005G111100 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic007G152400--Sobic002G428200 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic007G152400--Sobic001G481700 Sobic008G137600 Sobic008G137600 Sobic007G152400--Sobic008G137600 Sobic004G204800 Sobic004G204800 Sobic007G152400--Sobic004G204800 Sobic007G152400--Sobic002G331300 Sobic002G304900 Sobic002G304900 Sobic005G050500--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic005G050500--Sobic010G069400 Sobic009G233400 Sobic009G233400 Sobic005G050500--Sobic009G233400 Sobic002G056200 Sobic002G056200 Sobic005G050500--Sobic002G056200 Sobic001G039400 Sobic001G039400 Sobic005G050500--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic005G050500--Sobic003G387900 Sobic001G334300 Sobic001G334300 Sobic005G050500--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic005G050500--Sobic009G179100 Sobic007G029400 Sobic007G029400 Sobic005G050500--Sobic007G029400 Sobic004G335000 Sobic004G335000 Sobic002G428200--Sobic004G335000 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic002G428200--Sobic004G224900 Sobic006G252200 Sobic006G252200 Sobic002G428200--Sobic006G252200 Sobic001G502200 Sobic001G502200 Sobic002G428200--Sobic001G502200 Sobic002G428200--Sobic008G137600 Sobic001G010700 Sobic001G010700 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700 Sobic007G076300 Sobic007G076300 Sobic002G257400--Sobic007G076300 Sobic002G257400--Sobic004G224900 Sobic002G257400--Sobic004G335000 Sobic002G257400--Sobic002G428200 Sobic002G257400--Sobic007G152400 Sobic002G257400--Sobic004G204800 Sobic007G186800 Sobic007G186800 Sobic002G257400--Sobic007G186800 Sobic004G138800 Sobic004G138800 Sobic002G257400--Sobic004G138800 Sobic001G058100 Sobic001G058100 Sobic002G257400--Sobic001G058100 Sobic001G517600--Sobic001G436200 Sobic002G373800 Sobic002G373800 Sobic001G517600--Sobic002G373800 Sobic003G109600 Sobic003G109600 Sobic001G517600--Sobic003G109600 Sobic004G032000 Sobic004G032000 Sobic001G517600--Sobic004G032000 Sobic001G517600--Sobic002G406500 Sobic001G517600--Sobic005G050500 Sobic002G379500 Sobic002G379500 Sobic001G517600--Sobic002G379500 Sobic008G098800 Sobic008G098800 Sobic001G517600--Sobic008G098800 Sobic006G138100 Sobic006G138100 Sobic001G517600--Sobic006G138100 Sobic003G330500 Sobic003G330500 Sobic004G224900--Sobic003G330500 Sobic004G224900--Sobic006G252200 Sobic004G224900--Sobic007G176200 Sobic004G224900--Sobic004G138800 Sobic004G224900--Sobic007G076300 Sobic004G224900--Sobic001G481700 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic001G236300 Sobic001G236300 Sobic004G224900--Sobic001G236300
Octagon: transcription factors


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