Gene annotation
Transcriptome id Sobic.001G517600.1
Synonym RPL5B, OLI7, Sb01g048270
Functional annotation ribosomal L18p/L5e family protein, putative, expressed
UniProt C5WZW1
Pfam PF14204 PF00861
Panther DB PTHR23410
NCBI CDD KOG0875; 60S ribosomal protein L5
KEGG Orthology K02932; RP-L5e, large subunit ribosomal protein L5e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome GO:00080975S rRNA binding


Orthologs (automatic annotation)
TAIR AT5G39740 : ribosomal protein L5 B
RAP-DB (Rice) LOC_Os01g67134.1 : ribosomal L18p/L5e family protein, putative, expressed
MaizeGDB (Corn) Zm00025a039452 , Zm00025a026443 , Zm00025a000440
Brachypodium PNT61044
Barley HORVU2Hr1G073320.2 , HORVU5Hr1G040070.2 , HORVU5Hr1G040070.1 , HORVU5Hr1G092630.6 , HORVU5Hr1G092630.5 , HORVU5Hr1G092630.4 , HORVU5Hr1G092630.3 , HORVU5Hr1G092630.2 , HORVU5Hr1G092630.1 , HORVU2Hr1G073320.7 , HORVU2Hr1G073320.6 , HORVU2Hr1G073320.5 , HORVU2Hr1G073320.4 , HORVU2Hr1G073320.3 , HORVU2Hr1G073320.1
Wheat TraesCS2A02G296000 , TraesCS2A02G296000 , TraesCS2D02G293900 , TraesCS2D02G293900 , TraesCS2D02G293900 , TraesCS2B02G312400 , TraesCS2B02G312400 , TraesCS5A02G372700 , TraesCS5A02G372700
Populus -


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cDNA sequences
Sobic.001G517600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
2 Sobic.002G373800 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
3 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
4 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
5 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
6 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
7 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
8 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
9 Sobic.006G138100 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
10 Sobic.009G223300 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
11 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
12 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
13 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
14 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
15 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
16 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
17 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
18 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
19 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
20 Sobic.006G201500 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e


Gene co-expression network
sample Sobic001G517600 Sobic001G517600 Sobic001G436200 Sobic001G436200 Sobic001G517600--Sobic001G436200 Sobic002G373800 Sobic002G373800 Sobic001G517600--Sobic002G373800 Sobic003G109600 Sobic003G109600 Sobic001G517600--Sobic003G109600 Sobic004G032000 Sobic004G032000 Sobic001G517600--Sobic004G032000 Sobic002G406500 Sobic002G406500 Sobic001G517600--Sobic002G406500 Sobic005G050500 Sobic005G050500 Sobic001G517600--Sobic005G050500 Sobic002G379500 Sobic002G379500 Sobic001G517600--Sobic002G379500 Sobic008G098800 Sobic008G098800 Sobic001G517600--Sobic008G098800 Sobic006G138100 Sobic006G138100 Sobic001G517600--Sobic006G138100 Sobic001G436200--Sobic002G379500 Sobic002G047600 Sobic002G047600 Sobic001G436200--Sobic002G047600 Sobic002G056200 Sobic002G056200 Sobic001G436200--Sobic002G056200 Sobic001G016400 Sobic001G016400 Sobic001G436200--Sobic001G016400 Sobic002G374900 Sobic002G374900 Sobic001G436200--Sobic002G374900 Sobic001G436200--Sobic006G138100 Sobic006G213000 Sobic006G213000 Sobic001G436200--Sobic006G213000 Sobic001G016500 Sobic001G016500 Sobic001G436200--Sobic001G016500 Sobic006G137100 Sobic006G137100 Sobic001G436200--Sobic006G137100 Sobic002G373800--Sobic001G517600 Sobic010G173100 Sobic010G173100 Sobic002G373800--Sobic010G173100 Sobic002G373800--Sobic002G406500 Sobic002G263800 Sobic002G263800 Sobic002G373800--Sobic002G263800 Sobic003G280700 Sobic003G280700 Sobic002G373800--Sobic003G280700 Sobic002G373800--Sobic001G436200 Sobic005G111100 Sobic005G111100 Sobic002G373800--Sobic005G111100 Sobic001G011200 Sobic001G011200 Sobic002G373800--Sobic001G011200 Sobic002G373800--Sobic002G374900 Sobic003G109600--Sobic002G379500 Sobic009G223300 Sobic009G223300 Sobic003G109600--Sobic009G223300 Sobic001G403500 Sobic001G403500 Sobic003G109600--Sobic001G403500 Sobic001G039400 Sobic001G039400 Sobic003G109600--Sobic001G039400 Sobic003G249700 Sobic003G249700 Sobic003G109600--Sobic003G249700 Sobic003G109600--Sobic002G056200 Sobic003G109600--Sobic002G047600 Sobic007G019400 Sobic007G019400 Sobic003G109600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic003G109600--Sobic003G436700 Sobic004G032000--Sobic001G517600 Sobic003G129800 Sobic003G129800 Sobic004G032000--Sobic003G129800 Sobic004G032000--Sobic005G111100 Sobic001G128400 Sobic001G128400 Sobic004G032000--Sobic001G128400 Sobic004G032000--Sobic009G223300 Sobic009G191200 Sobic009G191200 Sobic004G032000--Sobic009G191200 Sobic008G135000 Sobic008G135000 Sobic004G032000--Sobic008G135000 Sobic004G032000--Sobic003G109600 Sobic004G032000--Sobic005G050500 Sobic001G085400 Sobic001G085400 Sobic002G406500--Sobic001G085400 Sobic001G377800 Sobic001G377800 Sobic002G406500--Sobic001G377800 Sobic002G406500--Sobic001G436200 Sobic002G406500--Sobic002G056200 Sobic002G406500--Sobic006G138100 Sobic002G115000 Sobic002G115000 Sobic002G406500--Sobic002G115000 Sobic002G049300 Sobic002G049300 Sobic002G406500--Sobic002G049300 Sobic002G406500--Sobic002G047600 Sobic002G304900 Sobic002G304900 Sobic002G406500--Sobic002G304900 Sobic005G050500--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic005G050500--Sobic010G069400 Sobic009G233400 Sobic009G233400 Sobic005G050500--Sobic009G233400 Sobic005G050500--Sobic002G056200 Sobic005G050500--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic005G050500--Sobic003G387900 Sobic001G334300 Sobic001G334300 Sobic005G050500--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic005G050500--Sobic009G179100 Sobic007G029400 Sobic007G029400 Sobic005G050500--Sobic007G029400 Sobic009G050300 Sobic009G050300 Sobic002G379500--Sobic009G050300 Sobic002G379500--Sobic006G213000 Sobic002G379500--Sobic002G056200 Sobic002G379500--Sobic001G403500 Sobic006G116700 Sobic006G116700 Sobic002G379500--Sobic006G116700 Sobic002G379500--Sobic003G109600 Sobic007G197800 Sobic007G197800 Sobic002G379500--Sobic007G197800 Sobic004G198400 Sobic004G198400 Sobic002G379500--Sobic004G198400 Sobic004G008400 Sobic004G008400 Sobic002G379500--Sobic004G008400 Sobic001G058900 Sobic001G058900 Sobic008G098800--Sobic001G058900 Sobic008G098800--Sobic002G049300 Sobic008G098800--Sobic009G233400 Sobic008G098800--Sobic010G069400 Sobic006G201500 Sobic006G201500 Sobic008G098800--Sobic006G201500 Sobic008G098800--Sobic002G304900 Sobic008G098800--Sobic001G377800 Sobic008G098800--Sobic005G050500 Sobic008G098800--Sobic003G280700 Sobic006G138100--Sobic001G436200 Sobic006G138100--Sobic002G047600 Sobic006G138100--Sobic002G379500 Sobic007G019000 Sobic007G019000 Sobic006G138100--Sobic007G019000 Sobic006G138100--Sobic006G137100 Sobic006G138100--Sobic004G008400 Sobic006G138100--Sobic003G109600 Sobic006G138100--Sobic009G050300 Sobic006G138100--Sobic006G116700
Octagon: transcription factors


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