Gene annotation
Transcriptome id Sobic.002G373800.1
Synonym Sb02g039166
Functional annotation elongation factor protein, putative, expressed
UniProt C5XE07
Pfam PF00736
Panther DB PTHR11595 PTHR11595:SF27
NCBI CDD KOG1668; Elongation factor 1 beta/delta chain
KEGG Orthology K03232; elongation factor 1-beta
Gene Ontology GO:0006414; translational elongation GO:0005853eukaryotic translation elongation factor 1 complex GO:0003746translation elongation factor activity


Orthologs (automatic annotation)
TAIR AT2G18110 : Translation elongation factor EF1B/ribosomal protein S6 family protein
RAP-DB (Rice) LOC_Os07g42300.1 : elongation factor protein, putative, expressed
MaizeGDB (Corn) Zm00025a037582 , Zm00025a048753
Brachypodium KQK15266
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G373800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
2 Sobic.010G173100 elongation factor 1-gamma, putative, expressed K03233: elongation factor 1-gamma
3 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
4 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
5 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
6 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
7 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
8 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
9 Sobic.002G374900 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
10 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
11 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
12 Sobic.010G039800 expressed protein -
13 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
14 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
15 Sobic.006G138100 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
16 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
17 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
18 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
19 Sobic.001G014500 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed K03016: RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3
20 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3


Gene co-expression network
sample Sobic002G373800 Sobic002G373800 Sobic001G517600 Sobic001G517600 Sobic002G373800--Sobic001G517600 Sobic010G173100 Sobic010G173100 Sobic002G373800--Sobic010G173100 Sobic002G406500 Sobic002G406500 Sobic002G373800--Sobic002G406500 Sobic002G263800 Sobic002G263800 Sobic002G373800--Sobic002G263800 Sobic003G280700 Sobic003G280700 Sobic002G373800--Sobic003G280700 Sobic001G436200 Sobic001G436200 Sobic002G373800--Sobic001G436200 Sobic005G111100 Sobic005G111100 Sobic002G373800--Sobic005G111100 Sobic001G011200 Sobic001G011200 Sobic002G373800--Sobic001G011200 Sobic002G374900 Sobic002G374900 Sobic002G373800--Sobic002G374900 Sobic001G517600--Sobic001G436200 Sobic001G517600--Sobic002G373800 Sobic003G109600 Sobic003G109600 Sobic001G517600--Sobic003G109600 Sobic004G032000 Sobic004G032000 Sobic001G517600--Sobic004G032000 Sobic001G517600--Sobic002G406500 Sobic005G050500 Sobic005G050500 Sobic001G517600--Sobic005G050500 Sobic002G379500 Sobic002G379500 Sobic001G517600--Sobic002G379500 Sobic008G098800 Sobic008G098800 Sobic001G517600--Sobic008G098800 Sobic006G138100 Sobic006G138100 Sobic001G517600--Sobic006G138100 Sobic010G173100--Sobic002G263800 Sobic010G173100--Sobic002G373800 Sobic003G107600 Sobic003G107600 Sobic010G173100--Sobic003G107600 Sobic010G182600 Sobic010G182600 Sobic010G173100--Sobic010G182600 Sobic009G065400 Sobic009G065400 Sobic010G173100--Sobic009G065400 Sobic008G161800 Sobic008G161800 Sobic010G173100--Sobic008G161800 Sobic010G173100--Sobic002G406500 Sobic010G173100--Sobic001G011200 Sobic001G046300 Sobic001G046300 Sobic010G173100--Sobic001G046300 Sobic001G085400 Sobic001G085400 Sobic002G406500--Sobic001G085400 Sobic001G377800 Sobic001G377800 Sobic002G406500--Sobic001G377800 Sobic002G406500--Sobic001G436200 Sobic002G056200 Sobic002G056200 Sobic002G406500--Sobic002G056200 Sobic002G406500--Sobic006G138100 Sobic002G115000 Sobic002G115000 Sobic002G406500--Sobic002G115000 Sobic002G049300 Sobic002G049300 Sobic002G406500--Sobic002G049300 Sobic002G047600 Sobic002G047600 Sobic002G406500--Sobic002G047600 Sobic002G304900 Sobic002G304900 Sobic002G406500--Sobic002G304900 Sobic002G263800--Sobic008G161800 Sobic007G095400 Sobic007G095400 Sobic002G263800--Sobic007G095400 Sobic001G483100 Sobic001G483100 Sobic002G263800--Sobic001G483100 Sobic009G180000 Sobic009G180000 Sobic002G263800--Sobic009G180000 Sobic002G263800--Sobic010G173100 Sobic010G039800 Sobic010G039800 Sobic002G263800--Sobic010G039800 Sobic009G016201 Sobic009G016201 Sobic002G263800--Sobic009G016201 Sobic010G204500 Sobic010G204500 Sobic002G263800--Sobic010G204500 Sobic004G310300 Sobic004G310300 Sobic002G263800--Sobic004G310300 Sobic003G280700--Sobic002G049300 Sobic003G280700--Sobic001G011200 Sobic006G081100 Sobic006G081100 Sobic003G280700--Sobic006G081100 Sobic003G280700--Sobic005G050500 Sobic003G280700--Sobic001G085400 Sobic004G198400 Sobic004G198400 Sobic003G280700--Sobic004G198400 Sobic003G280700--Sobic002G056200 Sobic009G022400 Sobic009G022400 Sobic003G280700--Sobic009G022400 Sobic001G403500 Sobic001G403500 Sobic003G280700--Sobic001G403500 Sobic001G436200--Sobic002G379500 Sobic001G436200--Sobic002G047600 Sobic001G436200--Sobic002G056200 Sobic001G016400 Sobic001G016400 Sobic001G436200--Sobic001G016400 Sobic001G436200--Sobic002G374900 Sobic001G436200--Sobic006G138100 Sobic006G213000 Sobic006G213000 Sobic001G436200--Sobic006G213000 Sobic001G016500 Sobic001G016500 Sobic001G436200--Sobic001G016500 Sobic006G137100 Sobic006G137100 Sobic001G436200--Sobic006G137100 Sobic001G128400 Sobic001G128400 Sobic005G111100--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic005G111100--Sobic003G129800 Sobic005G111100--Sobic004G032000 Sobic004G066800 Sobic004G066800 Sobic005G111100--Sobic004G066800 Sobic005G111100--Sobic003G280700 Sobic007G152400 Sobic007G152400 Sobic005G111100--Sobic007G152400 Sobic010G054200 Sobic010G054200 Sobic005G111100--Sobic010G054200 Sobic006G231700 Sobic006G231700 Sobic005G111100--Sobic006G231700 Sobic002G218000 Sobic002G218000 Sobic005G111100--Sobic002G218000 Sobic001G011200--Sobic001G436200 Sobic001G011200--Sobic002G374900 Sobic001G091801 Sobic001G091801 Sobic001G011200--Sobic001G091801 Sobic001G011200--Sobic002G056200 Sobic001G011200--Sobic004G198400 Sobic001G011200--Sobic003G280700 Sobic001G011200--Sobic001G403500 Sobic001G011200--Sobic001G046300 Sobic001G011200--Sobic001G016400 Sobic002G374900--Sobic001G436200 Sobic002G374900--Sobic001G091801 Sobic002G374900--Sobic004G198400 Sobic002G374900--Sobic001G016400 Sobic002G374900--Sobic001G011200 Sobic009G050300 Sobic009G050300 Sobic002G374900--Sobic009G050300 Sobic007G019000 Sobic007G019000 Sobic002G374900--Sobic007G019000 Sobic010G166100 Sobic010G166100 Sobic002G374900--Sobic010G166100 Sobic004G104100 Sobic004G104100 Sobic002G374900--Sobic004G104100
Octagon: transcription factors


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