Gene annotation
Transcriptome id Sobic.004G032000.1
Synonym Sb04g002770, ARS5, PAF1, ATPSM30
Functional annotation peptidase, T1 family, putative, expressed
UniProt C5XTW7
Pfam PF10584 PF00227
Panther DB PTHR11599 PTHR11599:SF12
NCBI CDD KOG0863; 20S proteasome, regulatory subunit alpha type PSMA1/PRE5
KEGG Orthology K02725; 20S proteasome subunit alpha 6
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process GO:0004175endopeptidase activity GO:0005839proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT5G42790 : proteasome alpha subunit F1
RAP-DB (Rice) LOC_Os02g04100.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a035006 , Zm00025a018890
Brachypodium KQJ93170
Barley HORVU6Hr1G017500.1 , HORVU6Hr1G017500.3 , HORVU6Hr1G017500.2
Wheat TraesCS6B02G126000 , TraesCS6A02G097800 , TraesCS6D02G084800
Populus -


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cDNA sequences
Sobic.004G032000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
2 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
3 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
4 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
5 Sobic.009G223300 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
6 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
7 Sobic.008G135000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
8 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
9 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
10 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
11 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
12 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
13 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
14 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
15 Sobic.010G042800 peptidase, T1 family, putative, expressed K02737: 20S proteasome subunit beta 5
16 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
17 Sobic.002G373800 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
18 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
19 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
20 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e


Gene co-expression network
sample Sobic004G032000 Sobic004G032000 Sobic001G517600 Sobic001G517600 Sobic004G032000--Sobic001G517600 Sobic003G129800 Sobic003G129800 Sobic004G032000--Sobic003G129800 Sobic005G111100 Sobic005G111100 Sobic004G032000--Sobic005G111100 Sobic001G128400 Sobic001G128400 Sobic004G032000--Sobic001G128400 Sobic009G223300 Sobic009G223300 Sobic004G032000--Sobic009G223300 Sobic009G191200 Sobic009G191200 Sobic004G032000--Sobic009G191200 Sobic008G135000 Sobic008G135000 Sobic004G032000--Sobic008G135000 Sobic003G109600 Sobic003G109600 Sobic004G032000--Sobic003G109600 Sobic005G050500 Sobic005G050500 Sobic004G032000--Sobic005G050500 Sobic001G436200 Sobic001G436200 Sobic001G517600--Sobic001G436200 Sobic002G373800 Sobic002G373800 Sobic001G517600--Sobic002G373800 Sobic001G517600--Sobic003G109600 Sobic001G517600--Sobic004G032000 Sobic002G406500 Sobic002G406500 Sobic001G517600--Sobic002G406500 Sobic001G517600--Sobic005G050500 Sobic002G379500 Sobic002G379500 Sobic001G517600--Sobic002G379500 Sobic008G098800 Sobic008G098800 Sobic001G517600--Sobic008G098800 Sobic006G138100 Sobic006G138100 Sobic001G517600--Sobic006G138100 Sobic003G129800--Sobic001G128400 Sobic003G129800--Sobic005G111100 Sobic002G304900 Sobic002G304900 Sobic003G129800--Sobic002G304900 Sobic003G249700 Sobic003G249700 Sobic003G129800--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic003G129800--Sobic001G058900 Sobic001G513500 Sobic001G513500 Sobic003G129800--Sobic001G513500 Sobic003G129800--Sobic009G223300 Sobic004G066800 Sobic004G066800 Sobic003G129800--Sobic004G066800 Sobic003G129800--Sobic005G050500 Sobic005G111100--Sobic001G128400 Sobic005G111100--Sobic003G129800 Sobic005G111100--Sobic004G032000 Sobic005G111100--Sobic004G066800 Sobic003G280700 Sobic003G280700 Sobic005G111100--Sobic003G280700 Sobic007G152400 Sobic007G152400 Sobic005G111100--Sobic007G152400 Sobic010G054200 Sobic010G054200 Sobic005G111100--Sobic010G054200 Sobic006G231700 Sobic006G231700 Sobic005G111100--Sobic006G231700 Sobic002G218000 Sobic002G218000 Sobic005G111100--Sobic002G218000 Sobic001G128400--Sobic005G111100 Sobic001G128400--Sobic003G129800 Sobic010G204500 Sobic010G204500 Sobic001G128400--Sobic010G204500 Sobic006G081100 Sobic006G081100 Sobic001G128400--Sobic006G081100 Sobic001G128400--Sobic003G249700 Sobic002G049300 Sobic002G049300 Sobic001G128400--Sobic002G049300 Sobic001G128400--Sobic010G054200 Sobic001G128400--Sobic003G280700 Sobic001G128400--Sobic003G109600 Sobic009G223300--Sobic003G109600 Sobic002G372400 Sobic002G372400 Sobic009G223300--Sobic002G372400 Sobic009G223300--Sobic002G379500 Sobic007G018300 Sobic007G018300 Sobic009G223300--Sobic007G018300 Sobic010G230700 Sobic010G230700 Sobic009G223300--Sobic010G230700 Sobic010G076400 Sobic010G076400 Sobic009G223300--Sobic010G076400 Sobic004G198400 Sobic004G198400 Sobic009G223300--Sobic004G198400 Sobic009G233400 Sobic009G233400 Sobic009G223300--Sobic009G233400 Sobic001G039400 Sobic001G039400 Sobic009G223300--Sobic001G039400 Sobic009G191200--Sobic009G233400 Sobic009G191200--Sobic008G135000 Sobic001G334300 Sobic001G334300 Sobic009G191200--Sobic001G334300 Sobic009G191200--Sobic001G058900 Sobic002G115000 Sobic002G115000 Sobic009G191200--Sobic002G115000 Sobic009G191200--Sobic002G049300 Sobic009G191200--Sobic003G280700 Sobic001G085400 Sobic001G085400 Sobic009G191200--Sobic001G085400 Sobic009G191200--Sobic002G304900 Sobic008G135000--Sobic001G058900 Sobic008G135000--Sobic009G233400 Sobic008G135000--Sobic002G304900 Sobic008G135000--Sobic002G115000 Sobic001G057300 Sobic001G057300 Sobic008G135000--Sobic001G057300 Sobic008G135000--Sobic009G191200 Sobic008G135000--Sobic001G334300 Sobic008G135000--Sobic001G085400 Sobic010G069400 Sobic010G069400 Sobic008G135000--Sobic010G069400 Sobic003G109600--Sobic002G379500 Sobic003G109600--Sobic009G223300 Sobic001G403500 Sobic001G403500 Sobic003G109600--Sobic001G403500 Sobic003G109600--Sobic001G039400 Sobic003G109600--Sobic003G249700 Sobic002G056200 Sobic002G056200 Sobic003G109600--Sobic002G056200 Sobic002G047600 Sobic002G047600 Sobic003G109600--Sobic002G047600 Sobic007G019400 Sobic007G019400 Sobic003G109600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic003G109600--Sobic003G436700 Sobic005G050500--Sobic002G304900 Sobic005G050500--Sobic010G069400 Sobic005G050500--Sobic009G233400 Sobic005G050500--Sobic002G056200 Sobic005G050500--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic005G050500--Sobic003G387900 Sobic005G050500--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic005G050500--Sobic009G179100 Sobic007G029400 Sobic007G029400 Sobic005G050500--Sobic007G029400
Octagon: transcription factors


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