Gene annotation
Transcriptome id Sobic.010G042800.1
Synonym PBE1, Sb10g003770
Functional annotation peptidase, T1 family, putative, expressed
UniProt C5Z4C7
Pfam PF00227
Panther DB PTHR11599 PTHR11599:SF63
NCBI CDD KOG0175; 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2
KEGG Orthology K02737; 20S proteasome subunit beta 5
Gene Ontology GO:0005839; proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G13060 : 20S proteasome beta subunit E1
RAP-DB (Rice) LOC_Os06g06030.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a049997
Brachypodium KQK19579
Barley HORVU7Hr1G022970.1 , HORVU7Hr1G022970.3 , HORVU7Hr1G022970.2
Wheat TraesCS7A02G110200 , TraesCS7B02G008100 , TraesCS7D02G105500
Populus -


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cDNA sequences
Sobic.010G042800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G310900 emp24/gp25L/p24 family protein, putative, expressed -
2 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
3 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
4 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
5 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
6 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
7 Sobic.001G331900 expressed protein -
8 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
9 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
10 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
11 Sobic.008G132700 ATP-grasp domain containing protein, expressed K01648: ATP citrate (pro-S)-lyase
12 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
13 Sobic.008G132800 expressed protein -
14 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
15 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
16 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
17 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
18 Sobic.010G029400 peptidase, T1 family, putative, expressed K02738: 20S proteasome subunit beta 1
19 Sobic.009G180000 OsCam1-3 - Calmodulin, expressed K02183: calmodulin
20 Sobic.002G376500 OsCML8 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML


Gene co-expression network
sample Sobic010G042800 Sobic010G042800 Sobic004G310900 Sobic004G310900 Sobic010G042800--Sobic004G310900 Sobic002G263800 Sobic002G263800 Sobic010G042800--Sobic002G263800 Sobic005G157200 Sobic005G157200 Sobic010G042800--Sobic005G157200 Sobic002G406500 Sobic002G406500 Sobic010G042800--Sobic002G406500 Sobic004G066800 Sobic004G066800 Sobic010G042800--Sobic004G066800 Sobic004G032000 Sobic004G032000 Sobic010G042800--Sobic004G032000 Sobic001G331900 Sobic001G331900 Sobic010G042800--Sobic001G331900 Sobic003G129800 Sobic003G129800 Sobic010G042800--Sobic003G129800 Sobic001G128400 Sobic001G128400 Sobic010G042800--Sobic001G128400 Sobic004G310900--Sobic010G042800 Sobic008G094600 Sobic008G094600 Sobic004G310900--Sobic008G094600 Sobic008G098800 Sobic008G098800 Sobic004G310900--Sobic008G098800 Sobic001G304400 Sobic001G304400 Sobic004G310900--Sobic001G304400 Sobic004G310900--Sobic002G406500 Sobic001G030300 Sobic001G030300 Sobic004G310900--Sobic001G030300 Sobic001G517600 Sobic001G517600 Sobic004G310900--Sobic001G517600 Sobic001G018200 Sobic001G018200 Sobic004G310900--Sobic001G018200 Sobic009G191200 Sobic009G191200 Sobic004G310900--Sobic009G191200 Sobic008G161800 Sobic008G161800 Sobic002G263800--Sobic008G161800 Sobic007G095400 Sobic007G095400 Sobic002G263800--Sobic007G095400 Sobic001G483100 Sobic001G483100 Sobic002G263800--Sobic001G483100 Sobic009G180000 Sobic009G180000 Sobic002G263800--Sobic009G180000 Sobic010G173100 Sobic010G173100 Sobic002G263800--Sobic010G173100 Sobic010G039800 Sobic010G039800 Sobic002G263800--Sobic010G039800 Sobic009G016201 Sobic009G016201 Sobic002G263800--Sobic009G016201 Sobic010G204500 Sobic010G204500 Sobic002G263800--Sobic010G204500 Sobic004G310300 Sobic004G310300 Sobic002G263800--Sobic004G310300 Sobic008G058300 Sobic008G058300 Sobic005G157200--Sobic008G058300 Sobic005G157200--Sobic001G331900 Sobic001G377800 Sobic001G377800 Sobic005G157200--Sobic001G377800 Sobic003G025200 Sobic003G025200 Sobic005G157200--Sobic003G025200 Sobic005G157200--Sobic002G406500 Sobic007G163700 Sobic007G163700 Sobic005G157200--Sobic007G163700 Sobic010G029400 Sobic010G029400 Sobic005G157200--Sobic010G029400 Sobic004G107600 Sobic004G107600 Sobic005G157200--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic005G157200--Sobic001G529000 Sobic001G085400 Sobic001G085400 Sobic002G406500--Sobic001G085400 Sobic002G406500--Sobic001G377800 Sobic001G436200 Sobic001G436200 Sobic002G406500--Sobic001G436200 Sobic002G056200 Sobic002G056200 Sobic002G406500--Sobic002G056200 Sobic006G138100 Sobic006G138100 Sobic002G406500--Sobic006G138100 Sobic002G115000 Sobic002G115000 Sobic002G406500--Sobic002G115000 Sobic002G049300 Sobic002G049300 Sobic002G406500--Sobic002G049300 Sobic002G047600 Sobic002G047600 Sobic002G406500--Sobic002G047600 Sobic002G304900 Sobic002G304900 Sobic002G406500--Sobic002G304900 Sobic004G066800--Sobic003G129800 Sobic004G066800--Sobic004G310300 Sobic004G066800--Sobic001G483100 Sobic007G092100 Sobic007G092100 Sobic004G066800--Sobic007G092100 Sobic010G154700 Sobic010G154700 Sobic004G066800--Sobic010G154700 Sobic005G111100 Sobic005G111100 Sobic004G066800--Sobic005G111100 Sobic001G513500 Sobic001G513500 Sobic004G066800--Sobic001G513500 Sobic003G155400 Sobic003G155400 Sobic004G066800--Sobic003G155400 Sobic004G066800--Sobic009G191200 Sobic004G032000--Sobic001G517600 Sobic004G032000--Sobic003G129800 Sobic004G032000--Sobic005G111100 Sobic004G032000--Sobic001G128400 Sobic009G223300 Sobic009G223300 Sobic004G032000--Sobic009G223300 Sobic004G032000--Sobic009G191200 Sobic008G135000 Sobic008G135000 Sobic004G032000--Sobic008G135000 Sobic003G109600 Sobic003G109600 Sobic004G032000--Sobic003G109600 Sobic005G050500 Sobic005G050500 Sobic004G032000--Sobic005G050500 Sobic001G331900--Sobic004G107600 Sobic001G331900--Sobic005G157200 Sobic001G331900--Sobic008G058300 Sobic002G078400 Sobic002G078400 Sobic001G331900--Sobic002G078400 Sobic008G132800 Sobic008G132800 Sobic001G331900--Sobic008G132800 Sobic004G300900 Sobic004G300900 Sobic001G331900--Sobic004G300900 Sobic001G331900--Sobic001G377800 Sobic003G362400 Sobic003G362400 Sobic001G331900--Sobic003G362400 Sobic001G331900--Sobic001G529000 Sobic003G129800--Sobic001G128400 Sobic003G129800--Sobic005G111100 Sobic003G129800--Sobic002G304900 Sobic003G249700 Sobic003G249700 Sobic003G129800--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic003G129800--Sobic001G058900 Sobic003G129800--Sobic001G513500 Sobic003G129800--Sobic009G223300 Sobic003G129800--Sobic004G066800 Sobic003G129800--Sobic005G050500 Sobic001G128400--Sobic005G111100 Sobic001G128400--Sobic003G129800 Sobic001G128400--Sobic010G204500 Sobic006G081100 Sobic006G081100 Sobic001G128400--Sobic006G081100 Sobic001G128400--Sobic003G249700 Sobic001G128400--Sobic002G049300 Sobic010G054200 Sobic010G054200 Sobic001G128400--Sobic010G054200 Sobic003G280700 Sobic003G280700 Sobic001G128400--Sobic003G280700 Sobic001G128400--Sobic003G109600
Octagon: transcription factors


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