Gene annotation
Transcriptome id Sobic.004G310900.1
Synonym Sb04g034320
Functional annotation emp24/gp25L/p24 family protein, putative, expressed
UniProt C5XSW7
Pfam PF01105
Panther DB PTHR22811 PTHR22811:SF68
NCBI CDD KOG1691; emp24/gp25L/p24 family of membrane trafficking proteins
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT1G09580 : emp24/gp25L/p24 family/GOLD family protein
RAP-DB (Rice) LOC_Os02g52920.1 : emp24/gp25L/p24 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a022240
Brachypodium KQK01728
Barley HORVU6Hr1G080310.18 , HORVU6Hr1G080310.19 , HORVU7Hr1G035390.1 , HORVU7Hr1G035390.3 , HORVU7Hr1G035390.2 , HORVU6Hr1G080310.20 , HORVU6Hr1G080310.23 , HORVU6Hr1G080310.22
Wheat TraesCS6B02G361000 , TraesCS6A02G330200 , TraesCS6D02G309100 , TraesCS6B02G361000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G042800 peptidase, T1 family, putative, expressed K02737: 20S proteasome subunit beta 5
2 Sobic.008G094600 - -
3 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
4 Sobic.001G304400 expressed protein -
5 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
6 Sobic.001G030300 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
7 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
8 Sobic.001G018200 prohibitin-2, putative, expressed K17081: prohibitin 2
9 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
10 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
11 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
12 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
13 Sobic.007G220900 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
14 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
15 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
16 Sobic.002G296200 expressed protein -
17 Sobic.001G116700 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
18 Sobic.003G233500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
19 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
20 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4


Gene co-expression network
sample Sobic004G310900 Sobic004G310900 Sobic010G042800 Sobic010G042800 Sobic004G310900--Sobic010G042800 Sobic008G094600 Sobic008G094600 Sobic004G310900--Sobic008G094600 Sobic008G098800 Sobic008G098800 Sobic004G310900--Sobic008G098800 Sobic001G304400 Sobic001G304400 Sobic004G310900--Sobic001G304400 Sobic002G406500 Sobic002G406500 Sobic004G310900--Sobic002G406500 Sobic001G030300 Sobic001G030300 Sobic004G310900--Sobic001G030300 Sobic001G517600 Sobic001G517600 Sobic004G310900--Sobic001G517600 Sobic001G018200 Sobic001G018200 Sobic004G310900--Sobic001G018200 Sobic009G191200 Sobic009G191200 Sobic004G310900--Sobic009G191200 Sobic010G042800--Sobic004G310900 Sobic002G263800 Sobic002G263800 Sobic010G042800--Sobic002G263800 Sobic005G157200 Sobic005G157200 Sobic010G042800--Sobic005G157200 Sobic010G042800--Sobic002G406500 Sobic004G066800 Sobic004G066800 Sobic010G042800--Sobic004G066800 Sobic004G032000 Sobic004G032000 Sobic010G042800--Sobic004G032000 Sobic001G331900 Sobic001G331900 Sobic010G042800--Sobic001G331900 Sobic003G129800 Sobic003G129800 Sobic010G042800--Sobic003G129800 Sobic001G128400 Sobic001G128400 Sobic010G042800--Sobic001G128400 Sobic008G094600--Sobic008G098800 Sobic002G135200 Sobic002G135200 Sobic008G094600--Sobic002G135200 Sobic001G058900 Sobic001G058900 Sobic008G094600--Sobic001G058900 Sobic008G094600--Sobic003G129800 Sobic009G223300 Sobic009G223300 Sobic008G094600--Sobic009G223300 Sobic008G094600--Sobic001G517600 Sobic008G100000 Sobic008G100000 Sobic008G094600--Sobic008G100000 Sobic001G513500 Sobic001G513500 Sobic008G094600--Sobic001G513500 Sobic001G286300 Sobic001G286300 Sobic008G094600--Sobic001G286300 Sobic008G098800--Sobic001G058900 Sobic002G049300 Sobic002G049300 Sobic008G098800--Sobic002G049300 Sobic009G233400 Sobic009G233400 Sobic008G098800--Sobic009G233400 Sobic010G069400 Sobic010G069400 Sobic008G098800--Sobic010G069400 Sobic006G201500 Sobic006G201500 Sobic008G098800--Sobic006G201500 Sobic002G304900 Sobic002G304900 Sobic008G098800--Sobic002G304900 Sobic001G377800 Sobic001G377800 Sobic008G098800--Sobic001G377800 Sobic005G050500 Sobic005G050500 Sobic008G098800--Sobic005G050500 Sobic003G280700 Sobic003G280700 Sobic008G098800--Sobic003G280700 Sobic003G443300 Sobic003G443300 Sobic001G304400--Sobic003G443300 Sobic001G432000 Sobic001G432000 Sobic001G304400--Sobic001G432000 Sobic001G286200 Sobic001G286200 Sobic001G304400--Sobic001G286200 Sobic003G249700 Sobic003G249700 Sobic001G304400--Sobic003G249700 Sobic009G212200 Sobic009G212200 Sobic001G304400--Sobic009G212200 Sobic007G019400 Sobic007G019400 Sobic001G304400--Sobic007G019400 Sobic001G304400--Sobic002G304900 Sobic003G150000 Sobic003G150000 Sobic001G304400--Sobic003G150000 Sobic009G062000 Sobic009G062000 Sobic001G304400--Sobic009G062000 Sobic001G085400 Sobic001G085400 Sobic002G406500--Sobic001G085400 Sobic002G406500--Sobic001G377800 Sobic001G436200 Sobic001G436200 Sobic002G406500--Sobic001G436200 Sobic002G056200 Sobic002G056200 Sobic002G406500--Sobic002G056200 Sobic006G138100 Sobic006G138100 Sobic002G406500--Sobic006G138100 Sobic002G115000 Sobic002G115000 Sobic002G406500--Sobic002G115000 Sobic002G406500--Sobic002G049300 Sobic002G047600 Sobic002G047600 Sobic002G406500--Sobic002G047600 Sobic002G406500--Sobic002G304900 Sobic001G030300--Sobic002G135200 Sobic009G179100 Sobic009G179100 Sobic001G030300--Sobic009G179100 Sobic006G261900 Sobic006G261900 Sobic001G030300--Sobic006G261900 Sobic001G030300--Sobic001G513500 Sobic010G023900 Sobic010G023900 Sobic001G030300--Sobic010G023900 Sobic009G101700 Sobic009G101700 Sobic001G030300--Sobic009G101700 Sobic009G119900 Sobic009G119900 Sobic001G030300--Sobic009G119900 Sobic002G356400 Sobic002G356400 Sobic001G030300--Sobic002G356400 Sobic002G296200 Sobic002G296200 Sobic001G030300--Sobic002G296200 Sobic001G517600--Sobic001G436200 Sobic002G373800 Sobic002G373800 Sobic001G517600--Sobic002G373800 Sobic003G109600 Sobic003G109600 Sobic001G517600--Sobic003G109600 Sobic001G517600--Sobic004G032000 Sobic001G517600--Sobic002G406500 Sobic001G517600--Sobic005G050500 Sobic002G379500 Sobic002G379500 Sobic001G517600--Sobic002G379500 Sobic001G517600--Sobic008G098800 Sobic001G517600--Sobic006G138100 Sobic001G018200--Sobic002G406500 Sobic006G216600 Sobic006G216600 Sobic001G018200--Sobic006G216600 Sobic001G018200--Sobic001G058900 Sobic001G057300 Sobic001G057300 Sobic001G018200--Sobic001G057300 Sobic001G018200--Sobic002G304900 Sobic010G038700 Sobic010G038700 Sobic001G018200--Sobic010G038700 Sobic001G018200--Sobic001G513500 Sobic001G018200--Sobic009G191200 Sobic001G018200--Sobic001G377800 Sobic009G191200--Sobic009G233400 Sobic008G135000 Sobic008G135000 Sobic009G191200--Sobic008G135000 Sobic001G334300 Sobic001G334300 Sobic009G191200--Sobic001G334300 Sobic009G191200--Sobic001G058900 Sobic009G191200--Sobic002G115000 Sobic009G191200--Sobic002G049300 Sobic009G191200--Sobic003G280700 Sobic009G191200--Sobic001G085400 Sobic009G191200--Sobic002G304900
Octagon: transcription factors


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