Gene annotation
Transcriptome id Sobic.001G116700.1
Synonym Sb01g010300, UEV1A, MMZ1
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt C5WN29
Pfam PF00179
Panther DB PTHR24067:SF46 PTHR24067
NCBI CDD KOG0896; Ubiquitin-conjugating enzyme E2
KEGG Orthology K10704; ubiquitin-conjugating enzyme E2 variant
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G23260 : MMS ZWEI homologue 1
RAP-DB (Rice) LOC_Os03g50440.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a007863 , Zm00025a016982
Brachypodium KQK13623 , KQK13622
Barley HORVU0Hr1G025900.2 , HORVU0Hr1G025900.1 , HORVU4Hr1G007560.4 , HORVU4Hr1G007560.1 , HORVU4Hr1G007560.2 , HORVU4Hr1G007560.3
Wheat TraesCS4D02G046700 , TraesCS4A02G267500 , TraesCS4B02G046900
Populus -


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cDNA sequences
Sobic.001G116700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G304400 expressed protein -
2 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin
3 Sobic.001G432000 LYR motif containing protein, putative, expressed -
4 Sobic.008G129400 cytochrome c oxidase polypeptide Vc, putative, expressed -
5 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
6 Sobic.009G062000 ribosomal protein L51, putative, expressed K03946: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 2
7 Sobic.004G026400 expressed protein -
8 Sobic.010G041600 profilin domain containing protein, expressed K05759: profilin
9 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
10 Sobic.004G306200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
11 Sobic.007G030700 transporter, putative, expressed -
12 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
13 Sobic.009G212200 expressed protein -
14 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
15 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
16 Sobic.003G410500 transaldolase, putative, expressed K00616: E2.2.1.2, talA, transaldolase
17 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
18 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
19 Sobic.001G478000 CutA, chloroplast precursor, putative, expressed K03926: periplasmic divalent cation tolerance protein
20 Sobic.001G444800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e


Gene co-expression network
sample Sobic001G116700 Sobic001G116700 Sobic001G304400 Sobic001G304400 Sobic001G116700--Sobic001G304400 Sobic001G034700 Sobic001G034700 Sobic001G116700--Sobic001G034700 Sobic001G432000 Sobic001G432000 Sobic001G116700--Sobic001G432000 Sobic008G129400 Sobic008G129400 Sobic001G116700--Sobic008G129400 Sobic010G018400 Sobic010G018400 Sobic001G116700--Sobic010G018400 Sobic009G062000 Sobic009G062000 Sobic001G116700--Sobic009G062000 Sobic004G026400 Sobic004G026400 Sobic001G116700--Sobic004G026400 Sobic010G041600 Sobic010G041600 Sobic001G116700--Sobic010G041600 Sobic003G150000 Sobic003G150000 Sobic001G116700--Sobic003G150000 Sobic003G443300 Sobic003G443300 Sobic001G304400--Sobic003G443300 Sobic001G304400--Sobic001G432000 Sobic001G286200 Sobic001G286200 Sobic001G304400--Sobic001G286200 Sobic003G249700 Sobic003G249700 Sobic001G304400--Sobic003G249700 Sobic009G212200 Sobic009G212200 Sobic001G304400--Sobic009G212200 Sobic007G019400 Sobic007G019400 Sobic001G304400--Sobic007G019400 Sobic002G304900 Sobic002G304900 Sobic001G304400--Sobic002G304900 Sobic001G304400--Sobic003G150000 Sobic001G304400--Sobic009G062000 Sobic001G034700--Sobic010G041600 Sobic001G086300 Sobic001G086300 Sobic001G034700--Sobic001G086300 Sobic001G048832 Sobic001G048832 Sobic001G034700--Sobic001G048832 Sobic009G176000 Sobic009G176000 Sobic001G034700--Sobic009G176000 Sobic007G051000 Sobic007G051000 Sobic001G034700--Sobic007G051000 Sobic005G188100 Sobic005G188100 Sobic001G034700--Sobic005G188100 Sobic003G285800 Sobic003G285800 Sobic001G034700--Sobic003G285800 Sobic010G178200 Sobic010G178200 Sobic001G034700--Sobic010G178200 Sobic001G034700--Sobic003G150000 Sobic010G251600 Sobic010G251600 Sobic001G432000--Sobic010G251600 Sobic005G168100 Sobic005G168100 Sobic001G432000--Sobic005G168100 Sobic001G432000--Sobic001G304400 Sobic009G232900 Sobic009G232900 Sobic001G432000--Sobic009G232900 Sobic001G432000--Sobic007G019400 Sobic001G432000--Sobic003G150000 Sobic001G054900 Sobic001G054900 Sobic001G432000--Sobic001G054900 Sobic010G206200 Sobic010G206200 Sobic001G432000--Sobic010G206200 Sobic006G156000 Sobic006G156000 Sobic001G432000--Sobic006G156000 Sobic008G129400--Sobic010G018400 Sobic008G129400--Sobic009G176000 Sobic002G190900 Sobic002G190900 Sobic008G129400--Sobic002G190900 Sobic002G398901 Sobic002G398901 Sobic008G129400--Sobic002G398901 Sobic008G129400--Sobic007G051000 Sobic006G083500 Sobic006G083500 Sobic008G129400--Sobic006G083500 Sobic010G012500 Sobic010G012500 Sobic008G129400--Sobic010G012500 Sobic001G445800 Sobic001G445800 Sobic008G129400--Sobic001G445800 Sobic003G209000 Sobic003G209000 Sobic008G129400--Sobic003G209000 Sobic010G018400--Sobic008G129400 Sobic003G368500 Sobic003G368500 Sobic010G018400--Sobic003G368500 Sobic003G155400 Sobic003G155400 Sobic010G018400--Sobic003G155400 Sobic010G018400--Sobic009G176000 Sobic010G018400--Sobic007G051000 Sobic010G154700 Sobic010G154700 Sobic010G018400--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic010G018400--Sobic001G132100 Sobic010G018400--Sobic001G048832 Sobic010G018400--Sobic001G445800 Sobic009G062000--Sobic001G304400 Sobic001G095632 Sobic001G095632 Sobic009G062000--Sobic001G095632 Sobic009G062000--Sobic008G129400 Sobic009G062000--Sobic001G432000 Sobic009G062000--Sobic010G018400 Sobic004G351500 Sobic004G351500 Sobic009G062000--Sobic004G351500 Sobic003G305100 Sobic003G305100 Sobic009G062000--Sobic003G305100 Sobic009G062000--Sobic001G286200 Sobic002G073800 Sobic002G073800 Sobic009G062000--Sobic002G073800 Sobic001G084900 Sobic001G084900 Sobic004G026400--Sobic001G084900 Sobic002G187500 Sobic002G187500 Sobic004G026400--Sobic002G187500 Sobic004G026400--Sobic001G432000 Sobic004G026400--Sobic001G445800 Sobic004G026400--Sobic003G150000 Sobic004G026400--Sobic003G285800 Sobic001G225700 Sobic001G225700 Sobic004G026400--Sobic001G225700 Sobic010G009300 Sobic010G009300 Sobic004G026400--Sobic010G009300 Sobic003G072300 Sobic003G072300 Sobic004G026400--Sobic003G072300 Sobic010G041600--Sobic001G034700 Sobic001G281400 Sobic001G281400 Sobic010G041600--Sobic001G281400 Sobic004G272800 Sobic004G272800 Sobic010G041600--Sobic004G272800 Sobic010G041600--Sobic002G190900 Sobic008G185400 Sobic008G185400 Sobic010G041600--Sobic008G185400 Sobic010G041600--Sobic001G086300 Sobic010G041600--Sobic010G178200 Sobic010G041600--Sobic008G129400 Sobic010G041600--Sobic007G051000 Sobic005G110800 Sobic005G110800 Sobic003G150000--Sobic005G110800 Sobic010G204500 Sobic010G204500 Sobic003G150000--Sobic010G204500 Sobic003G150000--Sobic003G249700 Sobic001G493001 Sobic001G493001 Sobic003G150000--Sobic001G493001 Sobic001G403500 Sobic001G403500 Sobic003G150000--Sobic001G403500 Sobic003G150000--Sobic001G054900 Sobic009G050300 Sobic009G050300 Sobic003G150000--Sobic009G050300 Sobic005G019700 Sobic005G019700 Sobic003G150000--Sobic005G019700 Sobic009G163800 Sobic009G163800 Sobic003G150000--Sobic009G163800
Octagon: transcription factors


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