Gene annotation
Transcriptome id Sobic.001G478000.1
Synonym Sb01g044770, CUTA
Functional annotation CutA, chloroplast precursor, putative, expressed
UniProt A0A1Z5SAZ7
Pfam PF03091
Panther DB PTHR23419 PTHR23419:SF0
NCBI CDD KOG3338; Divalent cation tolerance-related protein
KEGG Orthology K03926; periplasmic divalent cation tolerance protein
Gene Ontology GO:0010038; response to metal ion


Orthologs (automatic annotation)
TAIR AT2G33740 : Nitrogen regulatory PII-like, alpha/beta
RAP-DB (Rice) LOC_Os10g23204.1 : CutA, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a043596 , Zm00025a000997 , Zm00025a017729 , Zm00025a029279
Brachypodium KQJ96481 , KQJ96480
Barley -
Wheat TraesCS2B02G505000 , TraesCS2D02G479500
Populus -


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cDNA sequences
Sobic.001G478000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G240900 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
2 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
3 Sobic.001G388600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
4 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12
5 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
6 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
7 Sobic.004G216800 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
8 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
9 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
10 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
11 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
12 Sobic.009G212200 expressed protein -
13 Sobic.001G116700 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
14 Sobic.009G101700 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
15 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
16 Sobic.001G304400 expressed protein -
17 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
18 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
19 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
20 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A


Gene co-expression network
sample Sobic001G478000 Sobic001G478000 Sobic009G240900 Sobic009G240900 Sobic001G478000--Sobic009G240900 Sobic009G144300 Sobic009G144300 Sobic001G478000--Sobic009G144300 Sobic001G388600 Sobic001G388600 Sobic001G478000--Sobic001G388600 Sobic007G076300 Sobic007G076300 Sobic001G478000--Sobic007G076300 Sobic002G255100 Sobic002G255100 Sobic001G478000--Sobic002G255100 Sobic004G138800 Sobic004G138800 Sobic001G478000--Sobic004G138800 Sobic004G216800 Sobic004G216800 Sobic001G478000--Sobic004G216800 Sobic001G096100 Sobic001G096100 Sobic001G478000--Sobic001G096100 Sobic009G227400 Sobic009G227400 Sobic001G478000--Sobic009G227400 Sobic009G240900--Sobic001G478000 Sobic002G363100 Sobic002G363100 Sobic009G240900--Sobic002G363100 Sobic009G240900--Sobic004G138800 Sobic009G240900--Sobic007G076300 Sobic004G310300 Sobic004G310300 Sobic009G240900--Sobic004G310300 Sobic001G040800 Sobic001G040800 Sobic009G240900--Sobic001G040800 Sobic003G368500 Sobic003G368500 Sobic009G240900--Sobic003G368500 Sobic007G051000 Sobic007G051000 Sobic009G240900--Sobic007G051000 Sobic002G428200 Sobic002G428200 Sobic009G240900--Sobic002G428200 Sobic001G334300 Sobic001G334300 Sobic009G144300--Sobic001G334300 Sobic001G085400 Sobic001G085400 Sobic009G144300--Sobic001G085400 Sobic009G144300--Sobic009G227400 Sobic009G233400 Sobic009G233400 Sobic009G144300--Sobic009G233400 Sobic002G304900 Sobic002G304900 Sobic009G144300--Sobic002G304900 Sobic003G387900 Sobic003G387900 Sobic009G144300--Sobic003G387900 Sobic006G216600 Sobic006G216600 Sobic009G144300--Sobic006G216600 Sobic002G049300 Sobic002G049300 Sobic009G144300--Sobic002G049300 Sobic009G144300--Sobic002G255100 Sobic001G388600--Sobic001G478000 Sobic004G130100 Sobic004G130100 Sobic001G388600--Sobic004G130100 Sobic004G327300 Sobic004G327300 Sobic001G388600--Sobic004G327300 Sobic001G388600--Sobic002G363100 Sobic002G371100 Sobic002G371100 Sobic001G388600--Sobic002G371100 Sobic001G005900 Sobic001G005900 Sobic001G388600--Sobic001G005900 Sobic004G099900 Sobic004G099900 Sobic001G388600--Sobic004G099900 Sobic007G152400 Sobic007G152400 Sobic001G388600--Sobic007G152400 Sobic003G216500 Sobic003G216500 Sobic001G388600--Sobic003G216500 Sobic004G224900 Sobic004G224900 Sobic007G076300--Sobic004G224900 Sobic007G076300--Sobic004G138800 Sobic002G257400 Sobic002G257400 Sobic007G076300--Sobic002G257400 Sobic003G330500 Sobic003G330500 Sobic007G076300--Sobic003G330500 Sobic001G505500 Sobic001G505500 Sobic007G076300--Sobic001G505500 Sobic003G129800 Sobic003G129800 Sobic007G076300--Sobic003G129800 Sobic007G076300--Sobic004G310300 Sobic005G050500 Sobic005G050500 Sobic007G076300--Sobic005G050500 Sobic010G154700 Sobic010G154700 Sobic007G076300--Sobic010G154700 Sobic002G255100--Sobic009G227400 Sobic002G255100--Sobic009G144300 Sobic002G255100--Sobic001G334300 Sobic002G255100--Sobic001G085400 Sobic002G255100--Sobic002G049300 Sobic002G255100--Sobic002G304900 Sobic010G023900 Sobic010G023900 Sobic002G255100--Sobic010G023900 Sobic002G255100--Sobic009G233400 Sobic002G255100--Sobic004G216800 Sobic001G418900 Sobic001G418900 Sobic004G138800--Sobic001G418900 Sobic004G138800--Sobic004G224900 Sobic004G138800--Sobic007G076300 Sobic004G138800--Sobic001G505500 Sobic009G119900 Sobic009G119900 Sobic004G138800--Sobic009G119900 Sobic004G138800--Sobic001G096100 Sobic004G138800--Sobic003G330500 Sobic001G007600 Sobic001G007600 Sobic004G138800--Sobic001G007600 Sobic006G252200 Sobic006G252200 Sobic004G138800--Sobic006G252200 Sobic004G216800--Sobic009G227400 Sobic004G216800--Sobic002G255100 Sobic004G216800--Sobic001G085400 Sobic004G216800--Sobic004G138800 Sobic004G216800--Sobic009G144300 Sobic001G444800 Sobic001G444800 Sobic004G216800--Sobic001G444800 Sobic008G132400 Sobic008G132400 Sobic004G216800--Sobic008G132400 Sobic007G100425 Sobic007G100425 Sobic004G216800--Sobic007G100425 Sobic001G018800 Sobic001G018800 Sobic004G216800--Sobic001G018800 Sobic004G066800 Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic001G096100--Sobic004G138800 Sobic001G096100--Sobic003G330500 Sobic001G096100--Sobic006G252200 Sobic001G096100--Sobic004G224900 Sobic001G096100--Sobic002G255100 Sobic001G481700 Sobic001G481700 Sobic001G096100--Sobic001G481700 Sobic003G196800 Sobic003G196800 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic009G227400--Sobic001G334300 Sobic009G227400--Sobic009G144300 Sobic006G137100 Sobic006G137100 Sobic009G227400--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic009G227400--Sobic002G286900 Sobic009G076400 Sobic009G076400 Sobic009G227400--Sobic009G076400 Sobic009G227400--Sobic002G049300 Sobic009G227400--Sobic002G255100 Sobic009G227400--Sobic010G023900 Sobic009G227400--Sobic003G387900
Octagon: transcription factors


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