Gene annotation
Transcriptome id Sobic.004G216800.1
Synonym EDA27, Sb04g026200, NOP10
Functional annotation h/ACA ribonucleoprotein complex subunit 3, putative, expressed
UniProt C5XXQ4
Pfam PF04135
Panther DB PTHR13305 PTHR13305:SF0
NCBI CDD KOG3503; H/ACA snoRNP complex, subunit NOP10
KEGG Orthology K11130; NOP10, H/ACA ribonucleoprotein complex subunit 3
Gene Ontology GO:0001522; pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT2G20490 : nucleolar RNA-binding Nop10p family protein
RAP-DB (Rice) LOC_Os02g40514.2 : h/ACA ribonucleoprotein complex subunit 3, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK00365
Barley HORVU6Hr1G057640.1 , HORVU6Hr1G057640.2
Wheat TraesCS6D02G207200 , TraesCS6B02G254000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
2 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
3 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
4 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
5 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
6 Sobic.001G444800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
7 Sobic.008G132400 expressed protein -
8 Sobic.007G100425 - -
9 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
10 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
11 Sobic.008G149450 - -
12 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
13 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
14 Sobic.002G364500 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
15 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
16 Sobic.001G074300 40S ribosomal protein S29, putative, expressed K02980: RP-S29e, small subunit ribosomal protein S29e
17 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
18 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
19 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
20 Sobic.001G172000 expressed protein -


Gene co-expression network
sample Sobic004G216800 Sobic004G216800 Sobic009G227400 Sobic009G227400 Sobic004G216800--Sobic009G227400 Sobic002G255100 Sobic002G255100 Sobic004G216800--Sobic002G255100 Sobic001G085400 Sobic001G085400 Sobic004G216800--Sobic001G085400 Sobic004G138800 Sobic004G138800 Sobic004G216800--Sobic004G138800 Sobic009G144300 Sobic009G144300 Sobic004G216800--Sobic009G144300 Sobic001G444800 Sobic001G444800 Sobic004G216800--Sobic001G444800 Sobic008G132400 Sobic008G132400 Sobic004G216800--Sobic008G132400 Sobic007G100425 Sobic007G100425 Sobic004G216800--Sobic007G100425 Sobic001G018800 Sobic001G018800 Sobic004G216800--Sobic001G018800 Sobic001G334300 Sobic001G334300 Sobic009G227400--Sobic001G334300 Sobic009G227400--Sobic009G144300 Sobic006G137100 Sobic006G137100 Sobic009G227400--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic009G227400--Sobic002G286900 Sobic009G076400 Sobic009G076400 Sobic009G227400--Sobic009G076400 Sobic002G049300 Sobic002G049300 Sobic009G227400--Sobic002G049300 Sobic009G227400--Sobic002G255100 Sobic010G023900 Sobic010G023900 Sobic009G227400--Sobic010G023900 Sobic003G387900 Sobic003G387900 Sobic009G227400--Sobic003G387900 Sobic002G255100--Sobic009G227400 Sobic002G255100--Sobic009G144300 Sobic002G255100--Sobic001G334300 Sobic002G255100--Sobic001G085400 Sobic002G255100--Sobic002G049300 Sobic002G304900 Sobic002G304900 Sobic002G255100--Sobic002G304900 Sobic002G255100--Sobic010G023900 Sobic009G233400 Sobic009G233400 Sobic002G255100--Sobic009G233400 Sobic002G255100--Sobic004G216800 Sobic002G115000 Sobic002G115000 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic002G047600 Sobic002G047600 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic003G249700 Sobic003G249700 Sobic001G085400--Sobic003G249700 Sobic001G085400--Sobic003G387900 Sobic007G178600 Sobic007G178600 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic001G418900 Sobic001G418900 Sobic004G138800--Sobic001G418900 Sobic004G224900 Sobic004G224900 Sobic004G138800--Sobic004G224900 Sobic007G076300 Sobic007G076300 Sobic004G138800--Sobic007G076300 Sobic001G505500 Sobic001G505500 Sobic004G138800--Sobic001G505500 Sobic009G119900 Sobic009G119900 Sobic004G138800--Sobic009G119900 Sobic001G096100 Sobic001G096100 Sobic004G138800--Sobic001G096100 Sobic003G330500 Sobic003G330500 Sobic004G138800--Sobic003G330500 Sobic001G007600 Sobic001G007600 Sobic004G138800--Sobic001G007600 Sobic006G252200 Sobic006G252200 Sobic004G138800--Sobic006G252200 Sobic009G144300--Sobic001G334300 Sobic009G144300--Sobic001G085400 Sobic009G144300--Sobic009G227400 Sobic009G144300--Sobic009G233400 Sobic009G144300--Sobic002G304900 Sobic009G144300--Sobic003G387900 Sobic009G144300--Sobic006G216600 Sobic009G144300--Sobic002G049300 Sobic009G144300--Sobic002G255100 Sobic003G363800 Sobic003G363800 Sobic001G444800--Sobic003G363800 Sobic001G444800--Sobic001G085400 Sobic001G444800--Sobic009G076400 Sobic001G444800--Sobic003G249700 Sobic001G444800--Sobic003G387900 Sobic007G019400 Sobic007G019400 Sobic001G444800--Sobic007G019400 Sobic002G255300 Sobic002G255300 Sobic001G444800--Sobic002G255300 Sobic001G444800--Sobic007G178600 Sobic001G444800--Sobic009G227400 Sobic008G132400--Sobic004G138800 Sobic008G132400--Sobic006G216600 Sobic008G132400--Sobic004G216800 Sobic006G035900 Sobic006G035900 Sobic008G132400--Sobic006G035900 Sobic008G132400--Sobic003G363800 Sobic001G040100 Sobic001G040100 Sobic008G132400--Sobic001G040100 Sobic001G057300 Sobic001G057300 Sobic008G132400--Sobic001G057300 Sobic008G132400--Sobic001G085400 Sobic001G304400 Sobic001G304400 Sobic008G132400--Sobic001G304400 Sobic007G100425--Sobic004G216800 Sobic007G100425--Sobic004G224900 Sobic007G100425--Sobic008G132400 Sobic001G074300 Sobic001G074300 Sobic007G100425--Sobic001G074300 Sobic001G048832 Sobic001G048832 Sobic007G100425--Sobic001G048832 Sobic001G005900 Sobic001G005900 Sobic007G100425--Sobic001G005900 Sobic007G100425--Sobic004G138800 Sobic003G063300 Sobic003G063300 Sobic007G100425--Sobic003G063300 Sobic002G364500 Sobic002G364500 Sobic007G100425--Sobic002G364500 Sobic001G340500 Sobic001G340500 Sobic001G018800--Sobic001G340500 Sobic001G018800--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic001G018800--Sobic006G213000 Sobic001G018800--Sobic009G227400 Sobic003G018600 Sobic003G018600 Sobic001G018800--Sobic003G018600 Sobic009G166500 Sobic009G166500 Sobic001G018800--Sobic009G166500 Sobic001G011200 Sobic001G011200 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic001G018800--Sobic010G023900
Octagon: transcription factors


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